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Dear AFNI users-
We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:
https://discuss.afni.nimh.nih.gov
Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.
The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.
Sincerely,
AFNI HQ
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Hi all. I'd like to convert my GLM outputs from afni_proc.py into NIFTI files and transform them to template space in another program. When I use 3dAFNItoNIFTI to do the conversion, I get a NIFTI file that AFNI reads perfectly well, but when I do the transformation (in ANTs, if you care), I only get one volume. Let's name the three datasets as follows, just for speed:
afni_proc.py ou
by
Matt Weber
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AFNI Message Board
I'm having a similar problem with a variety of templates sent by a collaborator in NIFTI format. Basically it seems like the Y axis is flipped -- the back of the brain is on the left in the sagittal view, where it's usually on the right. Attached is the 3dinfo readout from one of the templates. I've tried the nifti_tool + 3dresample approach without success; neither -orient lpi (su
by
Matt Weber
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AFNI Message Board