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Dear AFNI users-
We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:
https://discuss.afni.nimh.nih.gov
Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.
The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.
Sincerely,
AFNI HQ
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After some careful sleuthing, I realized that the issue what that the coordinates were not being fed into the program as RAI coordinates. Adding the -orient feature I was able to fully automate the process. Thanks for all the help!!
-Rookie
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AFNI Message Board
Howdy ptaylor,
Thanks for the tips. I was able to create the mask with just one voxel, I believe, and a picture of this can be seen in the attachment to this file. However, when I go to use the 3dmaskave command, like so:
bash-3.2$ 3dmaskave -quiet -mask tmp_mask+tlrc /Users/reynaadmin/test.results/Ado_Updated_LargeRewardSmallReward_GroupHungerRegress+tlrc.BRIK[1]
++ 3dmaskave: AFNI versio
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AFNI Message Board
Hi ptaylor,
First off, wow, thank you so much for the quick reply. We have been using that 3dclust button and the 3dClusterize ... > o.cluster_report.txt trick religiously. It's been a huge help in automating the quantitative findings of our contrasts. As you suggested, in the past I did stumble upon setting the stat value as Olay as a way to automatically get the Thr= values, however, b
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AFNI Message Board
Hi everyone,
Recently, I've been tasked with documenting all the peak cluster Thr values for each of the contrasts we ran in our lab. The way I was told to do this (manually) is as follows:
1. In the report Gui, click Jump for the first voxel cluster
2. Record the Thr = value from the "Values at current crosshair voxel" section of the afni GUI
3. Repeat for each voxel in the
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AFNI Message Board