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Dear AFNI users-
We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:
https://discuss.afni.nimh.nih.gov
Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.
The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.
Sincerely,
AFNI HQ
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Hi pt,
seems like this was the problem, the script works perfectly fine now. Thank you very much for your help!
Johannes
by
AFNI1512
-
AFNI Message Board
Hi Taylor,
here is the command I am using (which worked for the T1 images):
for folder in /Users/lab/Desktop/MRI/*/
do
echo $folder
id=$(basename "$folder")
echo $id
t1="$folder"*"FLAIR"*".ni"*
echo $t1
mkdir /Users/lab/Desktop/MRI/$id/
/Users/lab/abin/@afni_refacer_run -input "$FLAIR" -mode_reface -anonymize_output -prefix
by
AFNI1512
-
AFNI Message Board
Hello, I am trying to reface FLAIR scans using @afni_refacer_run. The script worked perfectly fine for T1 images, but when I chose FLAIR images as input I only get the error
Need to have an input anatomical, at least
Is it possible to use @afni_refacer_run on FLAIR images?
Thank you very much for your help!
Johannes
by
AFNI1512
-
AFNI Message Board