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Dear AFNI users-
We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:
https://discuss.afni.nimh.nih.gov
Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.
The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.
Sincerely,
AFNI HQ
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Hi Rick,
thanks I intend to use afni_proc.py, but I'd like to understand some of the afni main commands before starting using afni_proc.
If I understood you correctly detrending will be performed in 3dTproject if I set the -polort flag, so I don't need to detrend the data before running 3dTproject, right? Do you recommend a particular degree for resting-state data, or is the default
by
samw
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AFNI Message Board
Thank you Rick. I haven't detrended the data yet but was thinking of doing it. I suppose there is no option to detrend with 3dTproject, as it would be nice to do everything in one swoop (bandpass, nuisance regression and detrending)? If this is not possible would you recommend using 3dDetrend with default options before 3dTproject? Thank you!
Sam
by
samw
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AFNI Message Board
Hello,
I have some data that have already been preprocessed using another software. Now I'd like to use 3dTproject to perform a simultaneous nuisance regression + bandpass filtering on these data. I have a text file with the CSF and WM regressors and another file with movement regressors. However I'm not sure how to input these files in the 3dTproject command:
3dTproject -input fun
by
samw
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AFNI Message Board
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Pages: 12