Doxygen Source Code Documentation

ContrastTest.m File Reference


Functions
	for (iT=1:1:N_tasks)
	for (j=1:1:N_basis)
for each there	are (polort+1) paramters in the baseline model mtrx
	fprintf (1, '\n\nYour contrast vectors for-glt options are:\n')
	for (k=1:1:N_tasks)
if	El (i).order(j) = []
if	for (m=1:1:N_basis)
if	for (p=1:1:Task(k).BasisOpt_struct(m).maxlag-Task(k).BasisOpt_struct(m).minlag+1)%mtrx(i
j	sign ()
	mtrx (i, p+(m-1)(Task(k).BasisOpt_struct(m).maxlag-Task(k).BasisOpt_struct(m).minlag+1)...+(k-1)(Task(k).BasisOpt_struct(m).maxlag-Task(k).BasisOpt_struct(m).minlag+1)N_basis...+(polort+1)N_runs)
Don t ask me how I worked this out It is so tedious and nasty to housekeep the indices Don t even remember how I figured it out now end end end end end	contrfile (i).name
	fprintf (1,'No.%i contrast vector= ', i)
	for (n=1:1:length)
	fprintf (1, '%g', mtrx(i, n))
	fprintf (fid, '%g ', mtrx(i, n))
end	fprintf (1, '\n')
	fclose (fid)
	fprintf (1, '\nThe vector for No.%i contrast is stored in file%s.\n\n', i, contrfile(i).name)
Variables
	function [err, contrfile]
Bethesda Maryland Define the function name for easy referencing	FuncName = 'ContrastTest'
Debug Flag	DBG = 1
initailize return variables	err = 1
Create a matrix so that dDeconvolve uses for regressor test	length = (polort+1)*N_runs+N_base
end end	mtrx = zeros(N_contr, (polort+1)N_runs+N_basisN_tasks)
for each	run = input('at (TR): ')
	fid = fopen(contrfile(i).name, 'w')
	return

Function Documentation

for each there are

(

polort+

)

Don t ask me how I worked this out It is so tedious and nasty to housekeep the indices Don t even remember how I figured it out now end end end end end contrfile

(

)

(

)

= []

Referenced by MResize(), resize_XImage(), and SUMA_ProcessBrushStroke().

end fclose

(

fid

)

for ( n = 1:1:length )

if for ( p = 1:1:Task(k).BasisOpt_struct(m).maxlag - Task(k).BasisOpt_struct(m).minlag + 1 )

if for ( m = 1:1:N_basis )

for ( k = 1:1:N_tasks )

for ( j = 1:1:N_basis )

for ( iT = 1:1:N_tasks )

fprintf	(	1	,
		'\nThe vector for No.%i contrast is stored in file%s.\n\n'	,
		i	,
		contrfile(i).	name
	)

end fprintf	(	1	,
		'\n'
	)

fprintf	(	fid	,
		'%g '	,
		mtrx(i, n)
	)

fprintf	(	1	,
		'%g'	,
		mtrx(i, n)
	)

fprintf	(	1	,
		'No.%i contrast	vector = `'`,
		i
	)

fprintf	(	1	,
		'\n\nYour contrast vectors for-glt options are:\n'
	)

mtrx	(	i	,
		p+(m-1)(Task(k).BasisOpt_struct(m).maxlag-Task(k).BasisOpt_struct(m).minlag+1)...+(k-1)(Task(k).BasisOpt_struct(m).maxlag-Task(k).BasisOpt_struct(m).minlag+1)N_basis...+(polort+1)	N_runs
	)

j sign ( ) [static, virtual]

Variable Documentation

Debug Flag DBG = 1

Definition at line 35 of file ContrastTest.m.

end err = 1

Definition at line 83 of file ContrastTest.m.

combine the two fid = fopen(contrfile(i).name, 'w')

Definition at line 597 of file IndiAna.m.

Referenced by conv_model(), SUMA_BrainVoyager_Read_vmr(), SUMA_Build_Cluster_From_Node(), SUMA_ConvexHullSurface(), SUMA_Convexity_Engine(), SUMA_DrawMesh(), SUMA_EquateSurfaceSize(), SUMA_FormNeighbOffset(), SUMA_Pattie_Volume(), SUMA_ProjectSurfaceToSphere(), SUMA_SphereQuality(), and SUMA_Surface_Curvature().

Bethesda Maryland Define the function name for easy referencing FuncName = 'ContrastTest'

Definition at line 32 of file ContrastTest.m.

function[err, contrfile]

Initial value:

 ContrastTest (N_runs, polort, N_basis, Task, N_tasks, N_contr, El, N_base)
%
%   [err,] = ContrastTest ()
%
%Purpose:
%   Construct the contrast test matrix used in -glt option of 3dDeconvolve.
%   
%   
%Input Parameters:
%   
%   
%   
%Output Parameters:
%   err : 0 No Problem
%       : 1  Problems
%   
%   
%      
%Key Terms:
%   
%More Info :
%   
%   
%   
%
%     Author : Gang Chen
%     Date : Tue Jul 29 13:01:05 EDT 2003
%     SSCC/NIMH/ National Institutes of Health

Definition at line 1 of file ContrastTest.m.

length = (polort+1)*N_runs+N_base

Definition at line 45 of file ContrastTest.m.

Referenced by alloc_ints(), alloc_vals_list(), arg_parse(), CacheLength(), computeVM(), COND_CopyText(), copy_variable(), countBytes(), DCM_ComputeExportLength(), DCM_ImportStream(), DCM_ListToString(), disp_numeric_data(), do_p1_comment(), emit_dac(), emit_dht(), EncodeCDC(), EncodeYDC(), entrypt(), exportData(), exportEncapsulatedPixels(), exportFixedFields(), exportPixels(), ExtractClassifiedVolume(), fvec_magnitude(), ge_header(), get_dht(), get_dqt(), get_dri(), get_interesting_appn(), get_sof(), get_sos(), glutBitmapLength(), glutStrokeLength(), hbAssignCodes(), hbCreateDecodeTables(), lengtype(), magnitude_f(), main(), make_data_reader(), match_table(), mri_read(), mri_read3D_analyze75(), mri_read_3A(), mri_read_3D(), mri_read_3D_delay(), mri_read_analyze75(), mri_read_ppm(), mri_read_ppm3(), nc_get_varm_double(), nc_get_varm_float(), nc_get_varm_int(), nc_get_varm_long(), nc_get_varm_schar(), nc_get_varm_short(), nc_get_varm_text(), nc_get_varm_uchar(), nc_put_varm_double(), nc_put_varm_float(), nc_put_varm_int(), nc_put_varm_long(), nc_put_varm_schar(), nc_put_varm_short(), nc_put_varm_text(), nc_put_varm_uchar(), ncdimdef(), ncdiminq(), p1gets(), parse_args(), process_COM(), process_SOFn(), put_one_arg(), read_ge_header(), read_ge_image(), ReadInputFileNames(), realloc_ints(), realloc_vals_list(), REORDER_main(), REORDER_parseMap(), save_marker(), SeparateLine(), setimpl(), settype(), skip_variable(), swapATGroupElement(), swapInPlace(), take_file_name(), THD_open_analyze(), THD_open_ctfmri(), THD_open_ctfsam(), UpdatePath(), vpClassifyScalars(), vprint(), vpScanlineNormals(), vpVolumeNormals(), write_generic_extension(), and writeFile().

end end mtrx = zeros(N_contr, (polort+1)*N_runs+N_basis*N_tasks)

Definition at line 49 of file ContrastTest.m.

return

Definition at line 84 of file ContrastTest.m.

else run = input('at (TR): ')

Referenced by ART_send_end_of_run(), check_stalled_run(), find_more_volumes(), PLUG_action_CB(), and SUMA_MarchingCubesSurface().

AFNI/NIfTI Server

Sections

Personal tools

Navigation

Doxygen Source Code Documentation

ContrastTest.m File Reference

Functions

Variables

Function Documentation

Variable Documentation