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Doxygen Source Code Documentation

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AFNI Source Code File List

Here is a list of all files with brief descriptions:
1dcat.c [code]
1ddot.c [code]
1deval.c [code]
1dfft.c [code]
1dftime.c [code]
1dgrayplot.c [code]
1dnorm.c [code]
1dplot.c [code]
1dsigplot.c [code]
1dsum.c [code]
1dsvd.c [code]
1dtranspose.c [code]
24swap.c [code]
2dImReg.c [code]
2swap.c [code]
2tocx.c [code]
3dAFNIto3D.c [code]
3dAFNItoANALYZE.c [code]
3dAFNItoMINC.c [code]
3dAFNItoNIFTI.c [code]
3dAFNItoNIML.c [code]
3dAFNItoRaw.c [code]
3dANALYZEtoAFNI.c [code]
3dAnatNudge.c [code]
3dAnhist.c [code]
3dANOVA.c [code]
3dANOVA.h [code]
3dANOVA2.c [code]
3dANOVA3.c [code]
3dAttribute.c [code]
3dAutobox.c [code]
3dAutomask.c [code]
3dAutoTcorrelate.c [code]
3daxialize.c [code]
3dbetafit.c [code]
3dbetafit2.c [code]
3dbetafit3.c [code]
3dbuc2fim.c [code]
3dbucket.c [code]
3dcalc.c [code]
3dClipLevel.c [code]
3dclust.c [code]
3dCM.c [code]
3dConvolve.c [code]
3dcopy.c [code]
3ddata.h [code]
3dDeconvolve.c [code]
3ddelay.c [code]
3dDespike.c [code]
3dDetrend.c [code]
3ddot.c [code]
3dDTeig.c [code]
3dDTtoDWI.c [code]
3ddup.c [code]
3dDWItoDT.c [code]
3dedge.c [code]
3dEntropy.c [code]
3destpdf.c [code]
3dExtrema.c [code]
3dFDR.c [code]
3dFFT.c [code]
3dfim+.c [code]
3dfim.c [code]
3dFourier.c [code]
3dfractionize.c [code]
3dFriedman.c [code]
3dFWHM.c [code]
3dhclip.c [code]
3dhistog.c [code]
3dinfo.c [code]
3dinfo_OLD.c [code]
3dIntracranial.c [code]
3dKruskalWallis.c [code]
3dLRflip.c [code]
3dMannWhitney.c [code]
3dmaskave.c [code]
3dmaskdump.c [code]
3dMax.c [code]
3dMean.c [code]
3dMedianFilter.c [code]
3dmerge.c [code]
3dMINCtoAFNI.c [code]
3dnewid.c [code]
3dNLfim.c [code]
3dnoise.c [code]
3dNotes.c [code]
3dnvals.c [code]
3dOverlap.c [code]
3dpc.c [code]
3dproject.c [code]
3drefit.c [code]
3dRegAna.c [code]
3drename.c [code]
3dresample.c [code]
3dretroicor.c [code]
3dROIstats.c [code]
3drotate.c [code]
3dRowFillin.c [code]
3dSpatNorm.c [code]
3dStatClust.c [code]
3dstrip.c [code]
3dTagalign.c [code]
3dTcat.c [code]
3dTcorrelate.c [code]
3dThreetoRGB.c [code]
3dToutcount.c [code]
3dTqual.c [code]
3dTSgen.c [code]
3dTshift.c [code]
3dTsmooth.c [code]
3dTstat.c [code]
3dttest.c [code]
3duca.c [code]
3dUndump.c [code]
3dUniformize.c [code]
3duuu.c [code]
3duuu2.c [code]
3dvolreg.c [code]
3dWarp.c [code]
3dWarpDrive.c [code]
3dWavelets.c [code]
3dWilcoxon.c [code]
3dWinsor.c [code]
3dZcat.c [code]
3dZcutup.c [code]
3dZeropad.c [code]
3dZFillin.c [code]
3dZregrid.c [code]
3T_toafni.c [code]
4swap.c [code]
abort_.c [code]
abut.c [code]
acconfig.h [code]
adwarp.c [code]
afni.c [code]
afni.h [code]
afni_broutim.h [code]
afni_driver.c [code]
afni_environ.c [code]
afni_environ.h [code]
afni_fimfunc.c [code]
afni_fimmer.c [code]
afni_fimmer_compute.c [code]
afni_friends.c [code]
afni_func.c [code]
afni_graph.c [code]
afni_graph.h [code]
AFNI_label.h [code]
afni_lock.c [code]
afni_logger.c [code]
afni_niml.c [code]
afni_pcor.c [code]
afni_pcor.h [code]
afni_pcor_update.c [code]
afni_plugin.c [code]
afni_plugin.h [code]
afni_plugin_CYGWIN.h [code]
afni_plugout.c [code]
afni_plugout.h [code]
afni_pplug_1dfunc.c [code]
afni_pplug_2dfunc.c [code]
afni_pplug_env.c [code]
afni_receive.c [code]
afni_setup.c [code]
afni_setup.h [code]
afni_slice.c [code]
afni_splash.c [code]
afni_splash.h [code]
afni_suma.c [code]
afni_suma.h [code]
afni_sumafunc.c [code]
afni_transforms.c [code]
afni_ttren.c [code]
afni_vcheck.c [code]
afni_version.c [code]
afni_vol2surf.c [code]
afni_warp.c [code]
afni_warp.h [code]
afni_widg.c [code]
agni_to_afni.c [code]
aiv.c [code]
all.h [code]
alloc.c [code]
alpha_asm.h [code]
AlphaSim.c [code]
Amalloc.h [code]
ansi.h [code]
ansi2knr.c [code]
aren.c [code]
aren.h [code]
arentest.c [code]
attr.c [code]
attributes.h [code]
backspace.c [code]
bbb.c [code]
bbox.c [code]
bbox.h [code]
betafit.c [code]
bframe.c [code]
bitio.c [code]
bitio.h [code]
bitvec.c [code]
block.c [code]
bsearch.c [code]
bseq.c [code]
byteorder.c [code]
byteorder.h [code]
bzip2.c [code]
c_abs.c [code]
c_cos.c [code]
c_div.c [code]
c_exp.c [code]
c_log.c [code]
c_sin.c [code]
c_sqrt.c [code]
cabs.c [code]
cat_matvec.c [code]
ccalc.c [code]
ccatt.c [code]
cderror.h [code]
cdf.c [code]
cdf_00.c [code]
cdf_01.c [code]
cdf_02.c [code]
cdf_03.c [code]
cdf_04.c [code]
cdf_05.c [code]
cdf_06.c [code]
cdf_07.c [code]
cdf_08.c [code]
cdf_09.c [code]
cdf_10.c [code]
cdf_11.c [code]
cdf_12.c [code]
cdf_13.c [code]
cdf_14.c [code]
cdf_15.c [code]
cdf_16.c [code]
cdf_17.c [code]
cdf_18.c [code]
cdf_19.c [code]
cdf_20.c [code]
cdf_21.c [code]
cdf_22.c [code]
cdf_23.c [code]
cdf_24.c [code]
cdf_25.c [code]
cdf_26.c [code]
cdf_27.c [code]
cdf_28.c [code]
cdf_29.c [code]
cdf_30.c [code]
cdf_31.c [code]
cdf_32.c [code]
cdf_33.c [code]
cdf_34.c [code]
cdf_35.c [code]
cdf_36.c [code]
cdf_37.c [code]
cdf_38.c [code]
cdf_39.c [code]
cdf_40.c [code]
cdf_41.c [code]
cdf_42.c [code]
cdf_43.c [code]
cdf_44.c [code]
cdf_45.c [code]
cdf_46.c [code]
cdf_47.c [code]
cdf_48.c [code]
cdf_49.c [code]
cdf_50.c [code]
cdf_51.c [code]
cdf_52.c [code]
cdf_53.c [code]
cdf_54.c [code]
cdf_55.c [code]
cdf_56.c [code]
cdf_57.c [code]
cdf_58.c [code]
cdf_59.c [code]
cdf_60.c [code]
cdf_61.c [code]
cdf_62.c [code]
cdf_63.c [code]
cdf_64.c [code]
cdf_65.c [code]
cdf_66.c [code]
cdf_67.c [code]
cdf_68.c [code]
cdf_69.c [code]
cdf_70.c [code]
cdf_71.c [code]
cdf_72.c [code]
cdf_73.c [code]
cdf_74.c [code]
cdf_75.c [code]
cdf_76.c [code]
cdf_77.c [code]
cdf_78.c [code]
cdf_79.c [code]
cdf_80.c [code]
cdflib/cdflib.h [code]
cdflib.h [code]
cdjpeg.c [code]
cdjpeg.h [code]
cds.c [code]
cjpeg.c [code]
ckconfig.c [code]
cl1.c [code]
clamlib.h [code]
close.c [code]
clp.c [code]
clp.h [code]
colari.c [code]
colcalc.c [code]
colfit.c [code]
color.c [code]
combine.c [code]
combine.h [code]
gifsicledir/config.h [code]
mpegtoppm_dir/vc++/config.h [code]
volpack/config.h [code]
convert.h [code]
convert_internal.h [code]
count.c [code]
covmat.c [code]
cox3d.h [code]
cox_render.c [code]
cox_render.h [code]
coxplot/coxplot.h [code]
coxplot.h [code]
cpu_accel.c [code]
cpu_state.c [code]
crao.c [code]
crao2.c [code]
cs.h [code]
cs_addto_args.c [code]
cs_laguerre.c [code]
cs_misc.c [code]
cs_qhull.c [code]
cs_qmed.c [code]
cs_sort_di.c [code]
cs_sort_ff.c [code]
cs_sort_fi.c [code]
cs_sort_fv.c [code]
cs_sort_ii.c [code]
cs_sort_template.h [code]
cs_symeig.c [code]
csfft.c [code]
csfft_AJ.c [code]
csfft_cache.c [code]
curve.c [code]
d_abs.c [code]
d_acos.c [code]
d_asin.c [code]
d_atan.c [code]
d_atn2.c [code]
d_cnjg.c [code]
d_cos.c [code]
d_cosh.c [code]
d_dim.c [code]
d_exp.c [code]
d_imag.c [code]
d_int.c [code]
d_lg10.c [code]
d_log.c [code]
d_mod.c [code]
d_nint.c [code]
d_prod.c [code]
d_sign.c [code]
d_sin.c [code]
d_sinh.c [code]
d_sqrt.c [code]
d_tan.c [code]
d_tanh.c [code]
daemonize.c [code]
data.c [code]
Daubechies.c [code]
dbtrace.h [code]
dct.h [code]
dct8.c [code]
debugtrace.c [code]
debugtrace.h [code]
decode.c [code]
Deconvolve.c [code]
defines.h [code]
defs.h [code]
delay.c [code]
derf_.c [code]
derfc_.c [code]
dfe.c [code]
dicom_hdr.c [code]
dicom_to_raw.c [code]
dim.c [code]
Dimon.c [code]
dimon_afni.c [code]
display.c [code]
display.h [code]
djpeg.c [code]
dlfcn.h [code]
dlopen.c [code]
dmalloc.c [code]
dmalloc.h [code]
dolio.c [code]
dsetdup.c [code]
dtime.c [code]
DTIStudioFibertoSegments.c [code]
due.c [code]
dumplib.c [code]
dumplib.h [code]
dyn_array.h [code]
editvol.h [code]
edt_addbrick.c [code]
edt_blur.c [code]
edt_buildmask.c [code]
edt_calcmask.c [code]
edt_checkargv.c [code]
edt_clust.c [code]
edt_clust2.c [code]
edt_clustarr.c [code]
edt_coerce.c [code]
edt_dsetitems.c [code]
edt_emptycopy.c [code]
edt_filtervol.c [code]
edt_fullcopy.c [code]
edt_help.c [code]
edt_onedset.c [code]
edt_scl2max.c [code]
edt_sortmask.c [code]
edt_substbrick.c [code]
edt_volamax.c [code]
edt_volpad.c [code]
edt_wodcopy.c [code]
edt_zscore.c [code]
ef1asc_.c [code]
ef1cmc_.c [code]
efence.c [code]
efence.h [code]
eis_bakvec.c [code]
eis_balanc.c [code]
eis_balbak.c [code]
eis_bandr.c [code]
eis_bandv.c [code]
eis_bisect.c [code]
eis_bqr.c [code]
eis_cbabk2.c [code]
eis_cbal.c [code]
eis_cdiv.c [code]
eis_cg.c [code]
eis_ch.c [code]
eis_cinvit.c [code]
eis_combak.c [code]
eis_comhes.c [code]
eis_comlr.c [code]
eis_comlr2.c [code]
eis_comqr.c [code]
eis_comqr2.c [code]
eis_cortb.c [code]
eis_corth.c [code]
eis_csroot.c [code]
eis_elmbak.c [code]
eis_elmhes.c [code]
eis_eltran.c [code]
eis_epslon.c [code]
eis_figi.c [code]
eis_figi2.c [code]
eis_hqr.c [code]
eis_hqr2.c [code]
eis_htrib3.c [code]
eis_htribk.c [code]
eis_htrid3.c [code]
eis_htridi.c [code]
eis_imtql1.c [code]
eis_imtql2.c [code]
eis_imtqlv.c [code]
eis_invit.c [code]
eis_minfit.c [code]
eis_ortbak.c [code]
eis_orthes.c [code]
eis_ortran.c [code]
eis_pythag.c [code]
eis_qzhes.c [code]
eis_qzit.c [code]
eis_qzval.c [code]
eis_qzvec.c [code]
eis_ratqr.c [code]
eis_rebak.c [code]
eis_rebakb.c [code]
eis_reduc.c [code]
eis_reduc2.c [code]
eis_rg.c [code]
eis_rgg.c [code]
eis_rs.c [code]
eis_rsb.c [code]
eis_rsg.c [code]
eis_rsgab.c [code]
eis_rsgba.c [code]
eis_rsm.c [code]
eis_rsp.c [code]
eis_rst.c [code]
eis_rt.c [code]
eis_svd.c [code]
eis_tinvit.c [code]
eis_tql1.c [code]
eis_tql2.c [code]
eis_tqlrat.c [code]
eis_trbak1.c [code]
eis_trbak3.c [code]
eis_tred1.c [code]
eis_tred2.c [code]
eis_tred3.c [code]
eis_tridib.c [code]
eis_tsturm.c [code]
eispack/eispack.h [code]
eispack.h [code]
endfile.c [code]
ent16.c [code]
ep_afni.c [code]
ep_afni.h [code]
epsim.c [code]
equiv.c [code]
erf_.c [code]
erfc_.c [code]
err.c [code]
f2cdir/error.c [code]
netcdf-3.5.0/src/libsrc/error.c [code]
error.h [code]
estpdf.c [code]
estpdf3.c [code]
jpeg-6b/example.c [code]
netcdf-3.5.0/src/cxx/example.c [code]
exec.c [code]
exit.c [code]
expr.c [code]
extor.c [code]
extract_mpeg2.c [code]
exx.c [code]
eispack/f2c.h [code]
f2c.h [code]
f2cdir/f2c.h [code]
F77_aloc.c [code]
fbits.h [code]
FD2.c [code]
ffio.c [code]
fft3.c [code]
fftcheck.c [code]
fftest.c [code]
fftnext.c [code]
fftprint.c [code]
fftw.h [code]
fftw_setup.c [code]
file.c [code]
file_tool.c [code]
file_tool.h [code]
fim+.c [code]
fim.c [code]
fim2.c [code]
fio.h [code]
fixed_plugins.h [code]
flippo.c [code]
float_scan.c [code]
Fmain.c [code]
fmalloc.c [code]
fmt.c [code]
fmt.h [code]
fmtlib.c [code]
format.c [code]
format.h [code]
formatdata.c [code]
fourier_filter.c [code]
fp.h [code]
coxplot/frame.c [code]
mpeg_encodedir/frame.c [code]
frame.h [code]
frames.h [code]
frametype.c [code]
from3d.c [code]
frstpt.c [code]
fsize.c [code]
fsize.h [code]
ftell_.c [code]
ftosh.c [code]
ftypes.h [code]
ge4_header.c [code]
ge4_header.h [code]
ge_header.c [code]
general.h [code]
geom.c [code]
geom.h [code]
geom2.c [code]
getarg_.c [code]
getenv_.c [code]
getopt.c [code]
getopt.h [code]
gettimeofday.c [code]
gettimeofday.h [code]
gif.h [code]
gifdiff.c [code]
giffunc.c [code]
gifread.c [code]
gifsicle.c [code]
gifsicle.h [code]
gifunopt.c [code]
gifview.c [code]
gifwrite.c [code]
gifx.c [code]
gifx.h [code]
global.c [code]
glut.h [code]
glut_8x13.c [code]
glut_9x15.c [code]
glut_bitmap.c [code]
glut_bwidth.c [code]
glut_cindex.c [code]
glut_cursor.c [code]
glut_dials.c [code]
glut_event.c [code]
glut_ext.c [code]
glut_fullscrn.c [code]
glut_get.c [code]
glut_hel10.c [code]
glut_hel12.c [code]
glut_hel18.c [code]
glut_init.c [code]
glut_input.c [code]
glut_menu.c [code]
glut_modifier.c [code]
glut_mroman.c [code]
glut_overlay.c [code]
glut_roman.c [code]
glut_shapes.c [code]
glut_space.c [code]
glut_stroke.c [code]
glut_swidth.c [code]
glut_tablet.c [code]
glut_teapot.c [code]
glut_tr10.c [code]
glut_tr24.c [code]
glut_util.c [code]
glut_win.c [code]
glut_winmisc.c [code]
glutbitmap.h [code]
glutint.h [code]
glutstroke.h [code]
grabber.c [code]
gram.c [code]
graph_compon.c [code]
grayer.c [code]
h_abs.c [code]
h_dim.c [code]
h_dnnt.c [code]
h_indx.c [code]
h_len.c [code]
h_mod.c [code]
h_nint.c [code]
h_sign.c [code]
Haar.c [code]
hasher.c [code]
header.c [code]
hide.c [code]
hl_ge.c [code]
hl_gt.c [code]
hl_le.c [code]
hl_lt.c [code]
huber.c [code]
huff.c [code]
headers/huff.h [code]
huff.h [code]
hw_bes.h [code]
i_abs.c [code]
i_dim.c [code]
i_dnnt.c [code]
i_indx.c [code]
i_len.c [code]
i_mod.c [code]
i_nint.c [code]
i_sign.c [code]
iargc_.c [code]
ibeta.c [code]
ibinom.c [code]
idct.c [code]
idct_alpha.c [code]
idct_altivec.c [code]
idct_mlib.c [code]
idct_mmx.c [code]
Ifile.c [code]
iframe.c [code]
iio.c [code]
ilnw.c [code]
im2niml.c [code]
imand.c [code]
imaver.c [code]
imcalc.c [code]
imcutup.c [code]
imdump.c [code]
imfft.c [code]
imfit.c [code]
immask.c [code]
imnoneg.c [code]
Imon.c [code]
Imon.h [code]
impdif.c [code]
impsd.c [code]
imreg.c [code]
imrotate.c [code]
imseq.c [code]
imseq.h [code]
imstack.c [code]
imstat.c [code]
imswap.c [code]
imupsam.c [code]
init.c [code]
inquire.c [code]
intr.c [code]
Intracranial.c [code]
Intracranial.h [code]
inttypes.h [code]
f2cdir/io.c [code]
qhulldir/io.c [code]
io.h [code]
iob.h [code]
iotest.c [code]
jcapimin.c [code]
jcapistd.c [code]
jccoefct.c [code]
jccolor.c [code]
jcdctmgr.c [code]
jchuff.c [code]
jchuff.h [code]
jcinit.c [code]
jcmainct.c [code]
jcmarker.c [code]
jcmaster.c [code]
jcomapi.c [code]
jcparam.c [code]
jcphuff.c [code]
jcprepct.c [code]
jcsample.c [code]
jctrans.c [code]
jdapimin.c [code]
jdapistd.c [code]
jdatadst.c [code]
jdatasrc.c [code]
jdcoefct.c [code]
jdcolor.c [code]
jdct.h [code]
jddctmgr.c [code]
jdhuff.c [code]
jdhuff.h [code]
jdinput.c [code]
jdmainct.c [code]
jdmarker.c [code]
jdmaster.c [code]
jdmerge.c [code]
jdphuff.c [code]
jdpostct.c [code]
jdsample.c [code]
jdtrans.c [code]
jerror.c [code]
jerror.h [code]
jfdctflt.c [code]
jfdctfst.c [code]
jfdctint.c [code]
jidctflt.c [code]
jidctfst.c [code]
jidctint.c [code]
jidctred.c [code]
jinclude.h [code]
jmemansi.c [code]
jmemdos.c [code]
jmemmac.c [code]
jmemmgr.c [code]
jmemname.c [code]
jmemnobs.c [code]
jmemsys.h [code]
jmorecfg.h [code]
jp_afni.c [code]
jp_afni.h [code]
jpeg.c [code]
jpeg.h [code]
jpegint.h [code]
jpeglib.h [code]
jpegtran.c [code]
jquant1.c [code]
jquant2.c [code]
jrevdct.c [code]
jutils.c [code]
jversion.h [code]
killer.h [code]
kpart.c [code]
l_ge.c [code]
l_gt.c [code]
l_le.c [code]
l_lt.c [code]
l_mcw_glob.c [code]
l_mcw_glob.h [code]
l_mri_dicom_hdr.c [code]
labmod.c [code]
layerutil.c [code]
layerutil.h [code]
lbitbits.c [code]
lbitshft.c [code]
lex.c [code]
libpnmrw.c [code]
libpnmrw.h [code]
libvers.c [code]
license.h [code]
line.c [code]
lio.h [code]
list_struct.c [code]
list_struct.h [code]
LiteClue.c [code]
LiteClue.h [code]
LiteClueP.h [code]
lll.h [code]
logo.h [code]
lread.c [code]
lwrite.c [code]
machdefs.h [code]
machdep.c [code]
machdep.h [code]
f2cdir/main.c [code]
mpeg_encodedir/main.c [code]
makeopts.c [code]
makewt.c [code]
malloc.c [code]
f2cdir/mathh.h [code]
mathh.h [code]
matrix.c [code]
matrix.h [code]
matrix_f.c [code]
matrix_f.h [code]
mayo_analyze.c [code]
mayo_analyze.h [code]
mbig.c [code]
mcrawl.c [code]
mcw.c [code]
mcw.h [code]
mcw_glob.c [code]
mcw_glob.h [code]
mcw_graf.c [code]
mcw_graf.h [code]
mcw_malloc.c [code]
mcw_malloc.h [code]
mcwfft.c [code]
f2cdir/mem.c [code]
qhulldir/mem.c [code]
mem.h [code]
memory.c [code]
memplt.c [code]
memset.c [code]
gifsicledir/merge.c [code]
qhulldir/merge.c [code]
merge.h [code]
mfwddct.c [code]
mheaders.c [code]
mheaders.h [code]
misc.c [code]
mmx.h [code]
model_beta.c [code]
model_constant.c [code]
model_convgamma.c [code]
model_convgamma2a.c [code]
model_diffexp.c [code]
model_diffusion.c [code]
model_gammavar.c [code]
model_linear.c [code]
model_null.c [code]
model_quadratic.c [code]
model_sinewave_ap.c [code]
model_sinewave_apf.c [code]
model_squarewave_ap.c [code]
model_squarewave_apf.c [code]
model_trnglwave_ap.c [code]
model_trnglwave_apf.c [code]
motion_comp.c [code]
motion_comp_alpha.c [code]
motion_comp_altivec.c [code]
motion_comp_mlib.c [code]
motion_comp_mmx.c [code]
moutput.c [code]
mpeg.c [code]
mpeg.h [code]
mpeg2.h [code]
mpeg2_internal.h [code]
mpeg2dec.c [code]
mproto.h [code]
mquant.c [code]
mri_2dalign.c [code]
mri_3dalign.c [code]
mri_add_name.c [code]
mri_aff2d.c [code]
mri_affine.c [code]
mri_align.c [code]
mri_blur3d.c [code]
mri_cat2D.c [code]
mri_cfft.c [code]
mri_colorsetup.c [code]
mri_complex_arith.c [code]
mri_copy.c [code]
mri_coxplot.c [code]
mri_cut.c [code]
mri_dicom_hdr.c [code]
mri_dicom_hdr.h [code]
mri_drawing.c [code]
mri_dup.c [code]
mri_edit.c [code]
mri_entropy16.c [code]
mri_equal.c [code]
mri_fft_complex.c [code]
mri_filt_fft.c [code]
mri_flip3D.c [code]
mri_flippo.c [code]
mri_float_func.c [code]
mri_free.c [code]
mri_fromstring.c [code]
mri_get_cmass.c [code]
mri_histobyte.c [code]
mri_histog.c [code]
mri_histoshort.c [code]
mri_image.h [code]
mri_isgray.c [code]
mri_lsqfit.c [code]
mri_max.c [code]
mri_medianfilter.c [code]
mri_min.c [code]
mri_new.c [code]
mri_nsize.c [code]
mri_order.c [code]
mri_overlay.c [code]
mri_percents.c [code]
mri_quantize.c [code]
mri_read.c [code]
mri_read_dicom.c [code]
mri_read_mpeg.c [code]
mri_read_stuff.c [code]
mri_render.c [code]
mri_render.h [code]
mri_rgba_compose.c [code]
mri_rota.c [code]
mri_scale.c [code]
mri_scalize.c [code]
mri_shift2D.c [code]
mri_shifter.c [code]
mri_sobel.c [code]
mri_stat_seq.c [code]
mri_stats.c [code]
mri_swapbytes.c [code]
mri_symbolize.c [code]
mri_thresh.c [code]
mri_to_byte.c [code]
mri_to_complex.c [code]
mri_to_float.c [code]
mri_to_mri.c [code]
mri_to_rgb.c [code]
mri_to_rgba.c [code]
mri_to_short.c [code]
mri_transpose.c [code]
mri_uncat2D.c [code]
mri_warp.c [code]
mri_warp3D.c [code]
mri_warp3D_align.c [code]
mri_write.c [code]
mri_write_analyze.c [code]
mri_write_angif.c [code]
mri_zeropad.c [code]
mrilib.h [code]
mritopgm.c [code]
mtypes.h [code]
multivector.c [code]
multivector.h [code]
mvv.c [code]
myget.c [code]
names.c [code]
names.h [code]
nc.c [code]
nc.h [code]
ncconfig.h [code]
ncdump.c [code]
ncdump.h [code]
ncio.c [code]
ncio.h [code]
nct.c [code]
ncx.c [code]
ncx.h [code]
ncx_cray.c [code]
netcdf-3.5.0/src/libsrc/netcdf.h [code]
netcdf.h [code]
newstuff.h [code]
nicat.c [code]
niccc.c [code]
niceprintf.c [code]
niceprintf.h [code]
nidset.c [code]
nifti_statlib.c [code]
nifti_statlib.h [code]
nimel.c [code]
niml.h [code]
niml_b64.c [code]
niml_byteorder.c [code]
niml_dataset.c [code]
niml_do.c [code]
niml_dtable.c [code]
niml_element.c [code]
niml_elemio.c [code]
niml_fileread.c [code]
niml_header.c [code]
niml_htable.c [code]
niml_malloc.c [code]
niml_md5.c [code]
niml_private.h [code]
niml_registry.c [code]
niml_rowtype.c [code]
niml_stat.c [code]
niml_stream.c [code]
niml_struct.c [code]
niml_sucker.c [code]
niml_url.c [code]
niml_util.c [code]
niml_uuid.c [code]
niml_vector.c [code]
nimltest.c [code]
nisurf.c [code]
NLfit.c [code]
NLfit.h [code]
NLfit_model.c [code]
NLfit_model.h [code]
nojpeg.c [code]
noparallel.c [code]
NPstats.c [code]
nsize.c [code]
onstack.h [code]
open.c [code]
optimize.c [code]
opts.c [code]
opts.h [code]
output.c [code]
output.h [code]
overfim.c [code]
overfim.h [code]
p1defs.h [code]
p1output.c [code]
p2t.c [code]
parallel.c [code]
parallel.h [code]
param.c [code]
param.h [code]
parse.h [code]
parse_args.c [code]
parser.c [code]
parser.h [code]
parser_int.c [code]
parseSchedule.c [code]
patchlevel.h [code]
pbar.c [code]
pbar.h [code]
pccdefs.h [code]
pcmat.c [code]
pcor.c [code]
pcor.h [code]
pdf.c [code]
pdf.h [code]
perim.c [code]
periml.c [code]
pfit.c [code]
pframe.c [code]
phace.c [code]
phdot.c [code]
phline.c [code]
plot_cox.c [code]
coxplot/plot_motif.c [code]
plot_motif.c [code]
plot_ps.c [code]
plot_ps2.c [code]
plot_strip.c [code]
plot_ts.c [code]
plot_x11.c [code]
plug_3ddot.c [code]
plug_3Ddump_V2.c [code]
plug_3ddup.c [code]
plug_4Ddump.c [code]
plug_betafit.c [code]
plug_clust.c [code]
plug_compress.c [code]
plug_coorder.c [code]
plug_copy.c [code]
plug_crender.c [code]
plug_deconvolve.c [code]
plug_delay_V2.c [code]
plug_delay_V2.h [code]
plug_drawdset.c [code]
plug_edit.c [code]
plug_extract.c [code]
plug_fourier.c [code]
plug_funcs.c [code]
plug_hemisub.c [code]
plug_histog.c [code]
plug_imreg.c [code]
plug_L1fit.c [code]
plug_lsqfit.c [code]
plug_maskave.c [code]
plug_maskcalc.c [code]
plug_maskcalc.h [code]
plug_maxima.c [code]
plug_maxima.h [code]
plug_nlfit.c [code]
plug_notes.c [code]
plug_nth_dataset.c [code]
plug_nudge.c [code]
plug_permtest.c [code]
plug_power.c [code]
plug_ppm.c [code]
plug_realtime.c [code]
plug_rename.c [code]
plug_render.c [code]
plug_reorder.c [code]
plug_reorder_parseMap.c [code]
plug_retroicor.c [code]
plug_roiedit.c [code]
plug_roiedit.h [code]
plug_roiplot.c [code]
plug_scatplot.c [code]
plug_second_dataset.c [code]
plug_stats.c [code]
plug_stavg.c [code]
plug_tag.c [code]
plug_threshold.c [code]
plug_ttget.c [code]
plug_vol2surf.c [code]
plug_volreg.c [code]
plug_wavelets.c [code]
plug_zeropad.c [code]
plugout_drive.c [code]
plugout_graph.c [code]
plugout_ijk.c [code]
plugout_surf.c [code]
plugout_tt.c [code]
plugout_tta.c [code]
ply.h [code]
plyfile.c [code]
plytest.c [code]
point.c [code]
points.c [code]
poly.c [code]
poly.h [code]
poly2.c [code]
posixio.c [code]
postdct.c [code]
postdct.h [code]
pow_ci.c [code]
pow_dd.c [code]
pow_di.c [code]
pow_hh.c [code]
pow_ii.c [code]
pow_qq.c [code]
pow_ri.c [code]
pow_zi.c [code]
pow_zz.c [code]
ppak_commons.c [code]
ppak_perim.c [code]
ppak_pwrit.c [code]
ppak_pwritf.c [code]
ppak_srface.c [code]
ppmtoargb.c [code]
ppmtocmap.c [code]
pread.c [code]
proc.c [code]
prototypes.h [code]
psearch.c [code]
put.c [code]
putget.c [code]
putpcc.c [code]
pwrit.c [code]
pwritf.c [code]
qbitbits.c [code]
qbitshft.c [code]
qcolor.c [code]
qft.c [code]
qhull.c [code]
qhull.h [code]
qhull_a.h [code]
qmed.c [code]
qplot.c [code]
qqq_rota.c [code]
qrot.c [code]
qset.c [code]
qset.h [code]
qsort.c [code]
qsort.h [code]
qtest.c [code]
quantize.c [code]
qunrot.c [code]
quotize.c [code]
r_abs.c [code]
r_acos.c [code]
r_asin.c [code]
r_atan.c [code]
r_atn2.c [code]
r_cnjg.c [code]
r_cos.c [code]
r_cosh.c [code]
r_dim.c [code]
r_exp.c [code]
r_idisp.c [code]
r_idisp.h [code]
r_imag.c [code]
r_int.c [code]
r_lg10.c [code]
r_log.c [code]
r_misc.c [code]
r_misc.h [code]
r_mod.c [code]
r_new_resam_dset.c [code]
r_new_resam_dset.h [code]
r_nint.c [code]
r_sign.c [code]
r_sin.c [code]
r_sinh.c [code]
r_sqrt.c [code]
r_tan.c [code]
r_tanh.c [code]
randgen.c [code]
ranks.c [code]
rate.c [code]
rate.h [code]
rawio.h [code]
rcov.c [code]
rdbmp.c [code]
rdcolmap.c [code]
rdfmt.c [code]
rdgif.c [code]
rdjpgcom.c [code]
rdppm.c [code]
rdrle.c [code]
rdswitch.c [code]
rdtarga.c [code]
readframe.c [code]
readframe.h [code]
readme_env.h [code]
realtime.c [code]
realtime.h [code]
RegAna.c [code]
retroicor.c [code]
retroicor.h [code]
rev.c [code]
rewind.c [code]
rgbtoycc.c [code]
rgbtoycc.h [code]
rgbyte.c [code]
RICKR_label.h [code]
rmz.c [code]
rnd.h [code]
rotcom.c [code]
rotmat.c [code]
rsfe.c [code]
RSFgen.c [code]
rsli.c [code]
rsne.c [code]
rtest1.c [code]
rtfeedme.c [code]
RWCox.h [code]
s_cat.c [code]
s_cmp.c [code]
s_copy.c [code]
s_paus.c [code]
s_rnge.c [code]
s_stop.c [code]
sample1.c [code]
sample2.c [code]
search.h [code]
serial_helper.c [code]
set.c [code]
setdsh.c [code]
setfrm.c [code]
setlin.c [code]
setw.c [code]
sfe.c [code]
sfim.c [code]
siemens_vision.c [code]
siemens_vision.h [code]
sig_die.c [code]
signal_.c [code]
simplex.c [code]
simplex.h [code]
Simplexx.c [code]
sink.c [code]
slice.c [code]
slider.c [code]
sonnets.h [code]
spanner.c [code]
specifics.c [code]
specifics.h [code]
splash_blank.h [code]
splash_blank_new.h [code]
splash_cox1.h [code]
splash_cox2.h [code]
splash_cox3.h [code]
splash_cox4.h [code]
splash_gang.h [code]
splash_mcw.h [code]
splash_sscc.h [code]
sqwave.c [code]
srface.c [code]
stat.c [code]
stat.h [code]
StatClust.c [code]
strblast.c [code]
strerror.c [code]
string.c [code]
subsample.c [code]
sue.c [code]
SUMA.c [code]
SUMA_3dBRAIN_VOYAGERtoAFNI.c [code]
SUMA_3dCRUISEtoAFNI.c [code]
SUMA_3dSkullStrip.c [code]
SUMA_3dSurf2Vol.c [code]
SUMA_3dSurf2Vol.h [code]
SUMA_3dSurfMask.c [code]
SUMA_3dVol2Surf.c [code]
SUMA_3dVol2Surf.h [code]
SUMA_Algorithms.c [code]
SUMA_Algorithms.h [code]
SUMA_BrainWrap.c [code]
SUMA_BrainWrap.h [code]
SUMA_coarsen.c [code]
SUMA_Color.c [code]
SUMA_Color.h [code]
SUMA_compare_surfaces.c [code]
SUMA_ConvexHull.c [code]
SUMA_CreateDO.c [code]
SUMA_CreateDO.h [code]
SUMA_DataSets.c [code]
SUMA_DataSets.h [code]
SUMA_define.h [code]
SUMA_display.c [code]
SUMA_display.h [code]
SUMA_DOmanip.c [code]
SUMA_DOmanip.h [code]
SUMA_Engine.c [code]
SUMA_Engine.h [code]
SUMA_GeomComp.c [code]
SUMA_GeomComp.h [code]
SUMA_glxdino.c [code]
SUMA_gts.c [code]
SUMA_gts.h [code]
SUMA_gts_insert.c [code]
SUMA_help.c [code]
SUMA_Homer.c [code]
SUMA_Homer.h [code]
SUMA_inflate_compare.c [code]
SUMA_input.c [code]
SUMA_input.h [code]
SUMA_IsoSurface.c [code]
SUMA_IsoSurface.h [code]
SUMA_IV_FaceSetsextract.c [code]
SUMA_IV_XYZextract.c [code]
SUMA_label.h [code]
SUMA_Load_Surface_Object.c [code]
SUMA_Load_Surface_Object.h [code]
SUMA_Macros.h [code]
SUMA_MiscFunc.c [code]
SUMA_MiscFunc.h [code]
suma_niml.c [code]
SUMA_niml.c [code]
SUMA_niml.h [code]
SUMA_ParseCommands.c [code]
SUMA_ParseCommands.h [code]
SUMA_pixmap2eps.c [code]
SUMA_ProgramTemplate.c [code]
SUMA_prototype.h [code]
SUMA_SampBias.c [code]
SUMA_SphericalMapping.c [code]
SUMA_SphericalMapping.h [code]
SUMA_StripPath.c [code]
SUMA_suma.c [code]
SUMA_suma.h [code]
SUMA_Surface_IO.c [code]
SUMA_Surface_IO.h [code]
SUMA_SurfaceToSurface.c [code]
SUMA_SurfaceToSurface.h [code]
SUMA_SurfClust.c [code]
SUMA_SurfClust.h [code]
SUMA_SurfMeasures.c [code]
SUMA_SurfMeasures.h [code]
SUMA_SurfNorm.c [code]
SUMA_SurfToSurf.c [code]
SUMA_SVmanip.c [code]
SUMA_SVmanip.h [code]
SUMA_trackball.c [code]
SUMA_trackball.h [code]
suma_types.h [code]
SUMA_VolData.c [code]
SUMA_xColBar.c [code]
SUMA_xColBar.h [code]
support.c [code]
surface_domain.h [code]
sysdep.c [code]
sysdep.h [code]
system_.c [code]
t_nc.c [code]
t_ncio.c [code]
t_ncx.c [code]
t_ncxx.c [code]
tagset.h [code]
tendra.h [code]
testcox.c [code]
tests.h [code]
testshear.c [code]
tfim.c [code]
thd.h [code]
thd_1Ddset.c [code]
thd_1Dtodset.c [code]
thd_3Ddset.c [code]
thd_analyzeread.c [code]
thd_atr.c [code]
thd_automask.c [code]
thd_autonudge.c [code]
thd_auxdata.c [code]
thd_avts.c [code]
thd_base64.c [code]
thd_brainormalize.c [code]
thd_brainormalize.h [code]
thd_bstats.c [code]
thd_center.c [code]
thd_checkidc.c [code]
thd_cliplevel.c [code]
thd_compress.c [code]
thd_compress.h [code]
thd_coords.c [code]
thd_correlate.c [code]
thd_countb.c [code]
thd_ctfread.c [code]
thd_delete.c [code]
thd_detrend.c [code]
thd_dsetatr.c [code]
thd_dsetdblk.c [code]
thd_dsetinsess.c [code]
thd_dsetinslist.c [code]
thd_dsetrow.c [code]
thd_dsetto1D.c [code]
thd_dsetto3D.c [code]
thd_editdaxes.c [code]
thd_entropy16.c [code]
thd_fdbrick.c [code]
thd_fdto1D.c [code]
thd_fdto2D.c [code]
thd_fetchdset.c [code]
thd_filestuff.c [code]
thd_floatscan.c [code]
thd_forcemalloc.c [code]
thd_get1D.c [code]
thd_getorient.c [code]
thd_getpathprogs.c [code]
thd_http.c [code]
thd_idcode.c [code]
thd_info.c [code]
thd_initalldir.c [code]
thd_initdblk.c [code]
thd_initdkptr.c [code]
thd_initprefix.c [code]
thd_initsess.c [code]
thd_intlist.c [code]
thd_iochan.c [code]
thd_iochan.h [code]
thd_linecount.c [code]
thd_loaddblk.c [code]
thd_logafni.c [code]
thd_makefbuc.c [code]
thd_makefim.c [code]
thd_makefith.c [code]
thd_makemask.c [code]
thd_maker.h [code]
thd_manydset.c [code]
thd_mastery.c [code]
thd_mattor.c [code]
thd_md5.c [code]
thd_median.c [code]
thd_mincread.c [code]
thd_mincwrite.c [code]
thd_mismatch.c [code]
thd_mnicoords.c [code]
thd_mpegread.c [code]
thd_newprefix.c [code]
thd_niftiread.c [code]
thd_niftiwrite.c [code]
thd_niftiwrite.h [code]
thd_nimlatr.c [code]
thd_notes.c [code]
thd_opendset.c [code]
thd_opentcat.c [code]
thd_orient.c [code]
thd_outlier_count.c [code]
thd_purgedblk.c [code]
thd_read_vecmat.c [code]
thd_reconpar.c [code]
thd_rot3d.c [code]
thd_rot3d_2byte.c [code]
thd_rot3d_byte.c [code]
thd_rotangles.c [code]
thd_rowfillin.c [code]
thd_sarr.c [code]
thd_serialate.c [code]
thd_shear3d.c [code]
thd_shear3d.h [code]
thd_shearwarp.c [code]
thd_shift2.c [code]
thd_statpval.c [code]
thd_strfunc.c [code]
thd_timeof.c [code]
thd_tmask.c [code]
thd_trusthost.c [code]
thd_tshift.c [code]
thd_ttatlas_query.c [code]
thd_warps.c [code]
thd_winsor.c [code]
thd_writeatr.c [code]
thd_writedblk.c [code]
thd_writedset.c [code]
thd_zblock.c [code]
thd_zeropad.c [code]
thd_zfillin.c [code]
tick4.c [code]
to26.c [code]
to3d.c [code]
to3d.h [code]
tokdefs.h [code]
toxx.c [code]
transupp.c [code]
transupp.h [code]
trusted_hosts.h [code]
ts.c [code]
ts.h [code]
typesize.c [code]
uio.c [code]
uncomment.c [code]
ungifwrt.c [code]
unix.c [code]
unu.c [code]
user.c [code]
user.h [code]
usignal.h [code]
util.c [code]
uuu.c [code]
uuu2.c [code]
uuu3.c [code]
v1hpg.c [code]
v2i.c [code]
var.c [code]
vardata.c [code]
vardata.h [code]
vax.c [code]
vecmat.h [code]
vector.c [code]
Vecwarp.c [code]
version.c [code]
video_out.c [code]
video_out.h [code]
video_out_dx.c [code]
video_out_null.c [code]
video_out_pgm.c [code]
video_out_sdl.c [code]
video_out_x11.c [code]
vlc.h [code]
vol2surf.c [code]
vol2surf.h [code]
volpack/volpack.h [code]
volpack.h [code]
vp_check.c [code]
vp_compAC00G.c [code]
vp_compAC11B.c [code]
vp_compAC1NB.c [code]
vp_compAC1NS.c [code]
vp_compAC1PB.c [code]
vp_compAC31B.c [code]
vp_compAC32B.c [code]
vp_compAC3NB.c [code]
vp_compAC3NS.c [code]
vp_compAC3PB.c [code]
vp_compAR00G.c [code]
vp_compAR11B.c [code]
vp_compAR1NB.c [code]
vp_compAR1NS.c [code]
vp_compAR1PB.c [code]
vp_compAR31B.c [code]
vp_compAR32B.c [code]
vp_compAR3NB.c [code]
vp_compAR3NS.c [code]
vp_compAR3PB.c [code]
vp_context.c [code]
vp_extract.c [code]
vp_file.c [code]
vp_global.h [code]
vp_linalg.c [code]
vp_octree.c [code]
vp_opts.c [code]
vp_renderA.c [code]
volpack/vp_renderB.c [code]
vp_renderB.c [code]
vp_renderC.c [code]
vp_renderR.c [code]
vp_resample.c [code]
vp_rle.c [code]
vp_shade.c [code]
vp_transpose.c [code]
vp_util.c [code]
vp_view.c [code]
vp_warp.c [code]
vp_warpA101N.c [code]
vp_warpA110N.c [code]
vp_warpA111N.c [code]
vp_warpA301N.c [code]
vp_warpA330N.c [code]
vp_warpA330R.c [code]
vp_warpA331N.c [code]
vp_warpA331R.c [code]
warp3D.c [code]
warp3D_sharm.c [code]
Wavelets.c [code]
Wavelets.h [code]
waver.c [code]
whereami.c [code]
whirlgif.c [code]
whirlgif.h [code]
win32cfg.h [code]
wptest.c [code]
wrap.c [code]
wrbmp.c [code]
wref.c [code]
wrgif.c [code]
wrjpgcom.c [code]
wrppm.c [code]
wrrle.c [code]
wrtarga.c [code]
wrtfmt.c [code]
wsfe.c [code]
wsle.c [code]
wsne.c [code]
xform.c [code]
xim.c [code]
xim.h [code]
xiner.c [code]
Xphace.c [code]
xsum.c [code]
xutil.c [code]
xutil.h [code]
xvisual.c [code]
xwsne.c [code]
coxplot/xxx.c [code]
xxx.c [code]
xxx_inet.c [code]
xxx_name_to_inet.c [code]
yuv2rgb.c [code]
yuv2rgb_mlib.c [code]
yuv2rgb_mmx.c [code]
z_abs.c [code]
z_cos.c [code]
z_div.c [code]
z_exp.c [code]
z_log.c [code]
z_sin.c [code]
z_sqrt.c [code]
zzaxxx.c [code]
zzaxyy.c [code]
zzchar.c [code]
zzclip.c [code]
zzlabl.c [code]
zzlgin.c [code]
zzline.c [code]
zzlinx.c [code]
zzliny.c [code]
zzlogx.c [code]
zzlogy.c [code]
zzperi.c [code]
zzphph.c [code]
zzphys.c [code]
 
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