Data Structures

Defines

Typedefs

Enumerations

Definition at line 109 of file mri_image.h.

Definition at line 108 of file mri_image.h.

The last MRI_TYPE yet defined.

Definition at line 43 of file mri_image.h.

Definition at line 26 of file mri_image.h.

Definition at line 225 of file mri_image.h.

Referenced by AFNI_set_valabel().

Definition at line 216 of file mri_image.h.

Referenced by AFNI_func_overlay(), AFNI_newfunc_overlay(), AFNI_ttatlas_overlay(), AFNI_vnlist_func_overlay(), AREN_render(), AREN_set_graybrick(), AREN_set_opabrick(), AREN_set_rgbbricks(), CALC_read_opts(), copy_bitvector(), corr_floatbit(), count_bitvector(), DRAW_fillin_CB(), equal_bitvector_piece(), FD_brick_to_mri(), FD_brick_to_series(), IMREG_main(), invert_bitvector_piece(), main(), MREN_render(), MREN_rgb_to_colorbytes(), MREN_set_graybytes(), MREN_set_opabytes(), MREN_set_rgbbytes(), mri_3to_rgb(), mri_aff2d_byte(), mri_brainormalize(), mri_cat2D(), mri_dup2D(), mri_flatten_rgb(), mri_flippo(), mri_histobyte(), mri_inflate_pbm(), mri_invert_inplace(), mri_read_stuff(), mri_rgb_to_3byte(), mri_rgb_to_3float(), mri_rgb_transform_nD(), mri_rgba_composite_array(), mri_sharpen_rgb(), mri_threshold(), mri_to_byte(), mri_to_byte_scl(), mri_transpose_byte(), mri_warp3D_set_womask(), mri_write_ascii(), mri_write_jpg(), mri_write_pnm(), mri_zeropad_2D(), one_bitvector_piece(), project_byte_mip(), randomize_bitvector_piece(), RCREND_cutout_blobs(), RCREND_draw_CB(), RCREND_overlay_ttatlas(), RCREND_reload_dataset(), RCREND_reload_func_dset(), RCREND_xhair_overlay(), RCREND_xhair_underlay(), REND_cutout_blobs(), REND_draw_CB(), REND_overlay_ttatlas(), REND_reload_dataset(), REND_reload_func_dset(), REND_xhair_overlay(), REND_xhair_underlay(), RT_process_data(), RT_registration_2D_onevol(), RT_registration_3D_onevol(), RT_start_dataset(), THD_cliplevel(), THD_orient_guess(), VOLREG_main(), and zero_bitvector_piece().

Definition at line 230 of file mri_image.h.

Referenced by AFNI_set_valabel().

Definition at line 221 of file mri_image.h.

Referenced by cx_scramble(), FD_brick_to_mri(), FD_brick_to_series(), ISQ_process_mri(), main(), mri_cat2D(), mri_complex_to_pair(), mri_fft2D(), mri_flippo(), mri_pair_to_complex(), mri_threshold(), mri_to_complex(), mri_to_mri_scl(), mri_transpose_complex(), mri_write_ascii(), mri_zeropad_2D(), and T3D_read_images().

Value:

( (nn)->dx = (oo)->dx , (nn)->dy = (oo)->dy , (nn)->dz = (oo)->dz , \
      (nn)->dt = (oo)->dt , (nn)->du = (oo)->du , (nn)->dv = (oo)->dv , \
      (nn)->dw = (oo)->dw ,                                             \
      (nn)->xo = (oo)->xo , (nn)->yo = (oo)->yo , (nn)->zo = (oo)->zo , \
      (nn)->to = (oo)->to , (nn)->uo = (oo)->uo , (nn)->vo = (oo)->vo , \
      (nn)->wo = (oo)->wo ,                                             \
      mri_add_name( (oo)->name , (nn) ) )

Definition at line 188 of file mri_image.h.

Referenced by ISQ_getimage(), ISQ_process_mri(), mri_3to_rgb(), mri_aff2d_byte(), mri_aff2d_rgb(), mri_affine_bicubic(), mri_brainormalize(), mri_complex_abs(), mri_complex_phase(), mri_copy(), mri_cut_2D(), mri_cut_3D(), mri_dup2D(), mri_dup2D_rgb2(), mri_dup2D_rgb3(), mri_dup2D_rgb4(), mri_dup2D_rgb_NN(), mri_edit_image(), mri_expand_2D(), mri_flatten(), mri_flatten_rgb(), mri_mult_to_float(), mri_multiply_complex(), mri_nsize(), mri_resize_NN(), mri_rota(), mri_rota_bilinear(), mri_rota_shear(), mri_scale_to_float(), mri_sharpen_rgb(), mri_shift2D_bilinear(), mri_sobel(), mri_stat_seq(), mri_to_byte(), mri_to_byte_scl(), mri_to_complex(), mri_to_complex_ext(), mri_to_float(), mri_to_rgb(), mri_to_rgba(), mri_to_short(), mri_to_short_sclip(), mri_transpose_byte(), mri_transpose_complex(), mri_transpose_float(), mri_transpose_int(), mri_transpose_rgbyte(), mri_transpose_short(), mri_watershedize(), mri_zeropad_2D(), mri_zeropad_3D(), THD_rota3D(), and THD_rota3D_matvec().

Value:

( ((iq)->ny == 1) ? 1 : ((iq)->nz == 1) ? 2 :     \
   ((iq)->nt == 1) ? 3 : ((iq)->nu == 1) ? 4 :     \
   ((iq)->nv == 1) ? 5 : ((iq)->nw == 1) ? 6 : 7 )

Definition at line 211 of file mri_image.h.

Referenced by mri_write_7D(), and mri_write_analyze().

Definition at line 229 of file mri_image.h.

Definition at line 220 of file mri_image.h.

Referenced by FD_brick_to_mri(), FD_brick_to_series(), mri_cat2D(), mri_flippo(), mri_threshold(), mri_write_ascii(), and mri_zeropad_2D().

Definition at line 228 of file mri_image.h.

Referenced by AFNI_set_valabel().

Definition at line 219 of file mri_image.h.

Referenced by AFNI_fimmer_compute(), AFNI_finalize_read_1D_CB(), AFNI_func_overlay(), AFNI_gra_send_CB(), AFNI_newfunc_overlay(), AFNI_vnlist_func_overlay(), avg_epochs(), CALC_read_opts(), calculate_results(), Computebmatrix(), conv_set_ref(), corr_floatbit(), CORREL_main(), custom_filter(), DC_main(), DELAY_main(), disp_mri_imarr(), do_xrestore_stuff(), DRAW_fillin_CB(), DSET2_func(), DSETN_func(), DT_read_opts(), extract_ts_array(), FD_brick_to_mri(), FD_brick_to_series(), Form_R_Matrix(), get_dfile_params(), GRA_doshift(), GRA_fixup_xaxis(), GRA_redraw_overlay(), GRA_refread_choose_CB(), HISTO_main(), IJKAR_reader(), IMREG_main(), init_bitvector_array(), init_floatvector_array(), init_indep_var_matrix(), initialize_program(), ISQ_getimage(), ISQ_graymap_draw(), ISQ_process_mri(), ISQ_rowgraph_draw(), L1F_main(), L1F_worker(), LSQ_main(), LSQ_worker(), main(), MAIN_workprocess(), matrix_file_read(), MCW_choose_CB(), mri_2dalign_setup(), mri_3dalign_one(), mri_3dalign_setup(), mri_3to_rgb(), MRI_5blur_inplace_3D(), mri_affine_bicubic(), mri_align_crao(), mri_align_dfspace(), MRI_autobbox(), mri_automask_image(), mri_automask_imarr(), mri_cat2D(), mri_complex_to_pair(), mri_delayed_lsqfit(), mri_dup2D(), mri_flatten(), mri_flatten_rgb(), mri_flippo(), mri_get_cmass_2D(), mri_get_cmass_3D(), mri_medianfilter(), mri_pair_to_complex(), mri_percents(), mri_psinv(), mri_quantile(), mri_read_1D(), mri_read_3A(), mri_read_ascii_ragged(), mri_rgb_to_3float(), mri_rgb_transform_nD(), mri_rota(), mri_rota_bilinear(), mri_rota_shear(), mri_scale_to_float(), mri_sharpen_rgb(), mri_shift2D_bilinear(), mri_shift_1D(), mri_startup_lsqfit(), mri_threshold(), mri_to_float(), mri_transpose_float(), mri_warp3D_align_fitim(), mri_warp3d_align_one(), mri_warp3D_align_setup(), mri_warp3D_cubic(), mri_warp3D_get_delta(), mri_warp3D_linear(), mri_warp3D_NN(), mri_warp3D_quintic(), mri_write_ascii(), mri_zeropad_2D(), normalize_floatvector(), NUD_rotate(), PERMTEST_compute(), PH_fakeim(), plot_graphs(), plot_image_surface(), PR_one_slice(), PRIC_main(), Process_Options(), quadrant_fimfunc(), read_input_data(), read_nodes_file(), read_one_time_series(), read_time_series(), read_ts_array(), RIC_CalcCoeffAB(), RIC_CorrectDataset(), RIC_ToCardiacPhase(), RIC_ToRespPhase(), ROIPLOT_main(), RT_fim_recurse(), RT_registration_2D_onevol(), RT_registration_3D_onevol(), sdata_from_1D(), set_node_list_data(), spearman_fimfunc(), STAVG_main(), SUMA_Load1DDset(), SUMA_Load_Surface_Object_eng(), SUMA_OpenDrawnROI_1D(), SUMA_Read_Color_Map_1D(), SUMA_Read_IRGB_file(), SUMA_readFScurv(), SUMA_ReadSegDO(), SUMA_VEC_Read(), sxyz_1D_to_nlist(), T3D_read_images(), text_graphs(), THD_autobbox(), THD_average_timeseries(), THD_cmass(), THD_dataset_tshift(), THD_extract_float_brick(), THD_extract_many_series(), THD_fetch_1D(), THD_get_all_timeseries(), THD_load_1D(), THD_mean_brick(), THD_median_brick(), THD_orient_guess(), THD_rms_brick(), THD_rota3D(), THD_rota3D_matvec(), TS_reader(), ts_to_ftime(), TSGEN_main(), UC_read_opts(), v2s_apply_filter(), VOLREG_main(), and write_table().

Definition at line 227 of file mri_image.h.

Referenced by AFNI_set_valabel().

Definition at line 218 of file mri_image.h.

Referenced by FD_brick_to_mri(), FD_brick_to_series(), main(), mri_cat2D(), mri_flatten(), mri_flippo(), mri_quantize(), mri_threshold(), mri_transpose_int(), mri_warp3D_align_fitim(), mri_warp3d_align_one(), mri_warp3D_align_setup(), mri_write_ascii(), and mri_zeropad_2D().

Check if MRI_IMAGE is 1D (ny=1)

Definition at line 199 of file mri_image.h.

Referenced by custom_filter().

Check if MRI_IMAGE is 2D (nz=1)

Definition at line 202 of file mri_image.h.

Referenced by main(), mri_2dalign_setup(), mri_aff2d_byte(), mri_aff2d_rgb(), mri_affine_bicubic(), mri_align_dfspace(), mri_fft_complex(), mri_filt_fft(), mri_flippo(), mri_nsize(), mri_rota(), mri_rota_bilinear(), mri_rota_shear(), mri_shift2D_bilinear(), mri_sobel(), mri_stat_seq(), mri_to_complex_ext(), mri_write(), and REG_command_line().

Check if MRI_IMAGE is 3D (nt=1)

Definition at line 205 of file mri_image.h.

Referenced by mri_3dalign_setup(), mri_zeropad_3D(), THD_rota3D(), and THD_rota3D_matvec().

Check if MRI_IMAGE is 4D (nu=1)

Definition at line 208 of file mri_image.h.

Determine if a MRI_TYPE is an integer type.

Definition at line 59 of file mri_image.h.

Referenced by EDIT_coerce_autoscale(), EDIT_coerce_autoscale_new(), main(), mri_scalize(), PR_type_scale(), s2v_nodes2volume(), THD_load_minc(), and THD_warp3D().

Definition at line 37 of file mri_image.h.

Definition at line 35 of file mri_image.h.

Max value of a byte.

Definition at line 47 of file mri_image.h.

Max value of an int.

Definition at line 55 of file mri_image.h.

Max value of a short.

Definition at line 51 of file mri_image.h.

Definition at line 222 of file mri_image.h.

Referenced by AFNI_newfunc_overlay(), AFNI_set_valabel(), AFNI_vnlist_func_overlay(), AREN_render(), CREN_render(), draw_image_line(), FD_brick_to_mri(), FD_brick_to_series(), ISQ_index_to_rgb(), ISQ_make_image(), ISQ_make_montage(), ISQ_overlay(), ISQ_process_mri(), ISQ_save_jpeg(), ISQ_saver_CB(), ISQ_snapsave(), JPEG_matrix_gray(), main(), MCW_pbar_to_mri(), MREN_render(), MREN_rgb_to_colorbytes(), MREN_rgb_to_colorshorts(), mri_aff2d_rgb(), mri_cat2D(), mri_colorsetup(), mri_drawemptyrectangle(), mri_drawfilledrectangle(), mri_drawline(), mri_drawtext(), mri_dup2D_rgb2(), mri_dup2D_rgb3(), mri_dup2D_rgb4(), mri_dup2D_rgb_NN(), mri_edgize(), mri_flippo(), mri_invert_inplace(), mri_isgray(), mri_quantize(), mri_read_ppm(), mri_read_stuff(), mri_rgba_composite_array(), mri_scale_to_float(), mri_threshold(), mri_to_complex(), mri_to_float(), mri_to_rgb(), mri_transpose_rgbyte(), mri_write_angif(), mri_write_ascii(), mri_write_jpg(), mri_write_pnm(), mri_zeropad_2D(), NUD_rotate(), PBAR_bigexpose_CB(), PLOT_matrix_gray(), RCREND_draw_CB(), REND_draw_CB(), rgb_to_XImage_clever(), rgb_to_XImage_simple(), SPLASH_decodexx(), SUMA_read_ppm(), and TTget_ppm().

Definition at line 223 of file mri_image.h.

Referenced by FD_brick_to_series(), mri_flippo(), mri_rgba_composite_array(), mri_scale_to_float(), mri_to_float(), and mri_to_rgba().

Definition at line 39 of file mri_image.h.

Definition at line 226 of file mri_image.h.

Referenced by AFNI_set_valabel().

Definition at line 217 of file mri_image.h.

Referenced by AFNI_func_overlay(), AFNI_newfunc_overlay(), AFNI_overlay(), AFNI_ttatlas_overlay(), AFNI_vnlist_func_overlay(), CALC_read_opts(), DRAW_fillin_CB(), FD_brick_to_mri(), FD_brick_to_series(), get_octant_clips(), IMREG_main(), ISQ_index_to_rgb(), ISQ_make_image(), ISQ_make_montage(), ISQ_overlay(), ISQ_process_mri(), main(), MREN_rgb_to_colorshorts(), MREN_set_rgbshorts(), mri_brainormalize(), mri_cat2D(), mri_dup2D(), mri_edgize(), mri_flippo(), mri_histoshort_all(), mri_histoshort_nonneg(), mri_percents(), mri_quantile(), mri_read_siemens(), mri_short2mask(), mri_threshold(), mri_to_XImage(), mri_transpose_short(), mri_watershedize(), mri_write_ascii(), mri_zeropad_2D(), partial_cliplevel(), RT_registration_2D_onevol(), RT_registration_3D_onevol(), T3D_read_images(), THD_cliplevel(), THD_orient_guess(), VOLREG_main(), and write_images().

Definition at line 36 of file mri_image.h.

Definition at line 27 of file mri_image.h.

Mar 1996: Extended to images up to 7D; Not all routines work with images > 2D -- check top of file for "7D SAFE" comments *

Definition at line 106 of file mri_image.h.

The MRI_byte data type.

Definition at line 16 of file mri_image.h.

I suppose that the next C makes this pleonastic.

A union type to hold all possible MRI_IMAGE types. This was created before I really understood how to use void *.

Stores one image (1D to 7D). Why 7D, you ask? Well, I originally only had 2D images here. When extending AFNI from 3D to 3D+time and buckets, I thought that I might use 4D images (x,y,z,t) as the basic element. Instead, I decided to use an array of 3D images (in a THD_datablock), but by then I'd extended this typedef to allow (x,y,z,t,u,v,w) dimensioned arrays. I don't think anyplace ever uses more than 3D images, though.

Integer flags for different image types. Sometimes called the "datum".

Triple to hold RGB bytes.

Integer flags for different image types. Sometimes called the "datum".

Enumeration values:

MRI_byte
MRI_short
MRI_int
MRI_float
MRI_double
MRI_complex
MRI_rgb
MRI_rgba

Definition at line 31 of file mri_image.h.

00031                       {
00032          MRI_byte , MRI_short  , MRI_int  ,
00033         MRI_float , MRI_double , MRI_complex , MRI_rgb , MRI_rgba } MRI_TYPE ;