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MRI_IMAGE Struct Reference#include <mri_image.h>
Detailed Description
Stores one image (1D to 7D). Why 7D, you ask? Well, I originally only had 2D images here. When extending AFNI from 3D to 3D+time and buckets, I thought that I might use 4D images (x,y,z,t) as the basic element. Instead, I decided to use an array of 3D images (in a THD_datablock), but by then I'd extended this typedef to allow (x,y,z,t,u,v,w) dimensioned arrays. I don't think anyplace ever uses more than 3D images, though.
Definition at line 121 of file mri_image.h.
Field Documentation
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physical pixel size, if != 0
Definition at line 257 of file mrilib.h.
Referenced by main(), mri_new_7D_generic(), mri_read(), mri_read3D_analyze75(), mri_read_dicom(), mri_read_ge4(), mri_to_niml(), mri_write_analyze(), niml_to_mri(), r_idisp_mri_image(), and r_mri_read_dicom(). |
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physical pixel size, if != 0
Definition at line 260 of file mrilib.h.
Referenced by AFNI_read_images(), main(), mri_new_7D_generic(), mri_read(), mri_read3D_analyze75(), mri_read_analyze75(), mri_read_dicom(), mri_read_ge4(), mri_read_siemens(), mri_to_niml(), mri_write_analyze(), niml_to_mri(), r_idisp_mri_image(), r_mri_read_dicom(), and T3D_read_images(). |
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physical pixel size, if != 0
Definition at line 254 of file mrilib.h.
Referenced by AFNI_dataset_slice(), AFNI_func_overlay(), AFNI_overlay(), AFNI_read_images(), AIVVV_imseq_addto(), AIVVV_imseq_popup(), evolve_bitvector_array(), FD_brick_to_mri(), FD_brick_to_series(), GRA_redraw_overlay(), init_bitvector_array(), ISQ_make_image(), ISQ_make_montage(), ISQ_process_mri(), ISQ_save_jpeg(), ISQ_saver_CB(), main(), mri_3dalign_one(), mri_3dalign_setup(), mri_brainormalize(), mri_filt_fft(), mri_flip3D(), mri_flippo(), mri_new_7D_generic(), mri_read(), mri_read3D_analyze75(), mri_read_analyze75(), mri_read_dicom(), mri_read_ge4(), mri_read_siemens(), mri_resize_NN(), mri_rgb_transform_nD(), mri_squareaspect(), mri_to_niml(), mri_write_analyze(), niml_to_mri(), open_MCW_imseq(), plot_graphs(), plot_image_surface(), r_idisp_mri_image(), r_mri_read_dicom(), read_dicom_image(), RT_registration_3D_onevol(), RT_registration_3D_setup(), T3D_read_images(), THD_extract_many_series(), THD_extract_series(), THD_orient_guess(), THD_rota3D(), THD_rota3D_matvec(), and VOLREG_main(). |
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physical pixel size, if != 0
Definition at line 255 of file mrilib.h.
Referenced by AFNI_dataset_slice(), AFNI_func_overlay(), AFNI_overlay(), AFNI_read_images(), AIVVV_imseq_addto(), AIVVV_imseq_popup(), FD_brick_to_mri(), ISQ_make_image(), ISQ_make_montage(), ISQ_process_mri(), ISQ_save_jpeg(), ISQ_saver_CB(), main(), mri_3dalign_one(), mri_3dalign_setup(), mri_brainormalize(), mri_filt_fft(), mri_flip3D(), mri_flippo(), mri_new_7D_generic(), mri_read(), mri_read3D_analyze75(), mri_read_analyze75(), mri_read_dicom(), mri_read_ge4(), mri_read_siemens(), mri_resize_NN(), mri_rgb_transform_nD(), mri_squareaspect(), mri_to_niml(), mri_write_analyze(), niml_to_mri(), open_MCW_imseq(), plot_image_surface(), r_idisp_mri_image(), r_mri_read_dicom(), read_dicom_image(), RT_registration_3D_onevol(), RT_registration_3D_setup(), T3D_read_images(), THD_orient_guess(), THD_rota3D(), THD_rota3D_matvec(), and VOLREG_main(). |
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physical pixel size, if != 0
Definition at line 256 of file mrilib.h.
Referenced by AFNI_dataset_slice(), AFNI_overlay(), AFNI_read_images(), FD_brick_to_mri(), main(), mri_3dalign_one(), mri_3dalign_setup(), mri_brainormalize(), mri_flip3D(), mri_flippo(), mri_new_7D_generic(), mri_read(), mri_read3D_analyze75(), mri_read_analyze75(), mri_read_dicom(), mri_read_ge4(), mri_read_siemens(), mri_to_niml(), mri_write_analyze(), niml_to_mri(), r_idisp_mri_image(), r_mri_read_dicom(), read_dicom_image(), RT_registration_3D_onevol(), RT_registration_3D_setup(), T3D_read_images(), THD_orient_guess(), THD_rota3D(), THD_rota3D_matvec(), and VOLREG_main(). |
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to read actual image data after delay
Definition at line 280 of file mrilib.h. |
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pointer to actual pixel data
Definition at line 251 of file mrilib.h.
Referenced by ISQ_process_mri(), main(), mri_complex_abs(), mri_complex_phase(), mri_data_pointer(), mri_fix_data_pointer(), mri_max(), mri_maxabs(), mri_min(), mri_mult_to_float(), mri_multiply_complex(), mri_new_7D_generic(), mri_scale_to_float(), mri_swapbytes(), mri_to_byte(), mri_to_byte_scl(), mri_to_complex(), mri_to_complex_ext(), mri_to_float(), mri_to_rgb(), mri_to_rgba(), mri_to_short(), r_idisp_mri_image(), and write_images(). |
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one of the MRI_TYPE codes above
Definition at line 250 of file mrilib.h.
Referenced by adwarp_refashion_dataset(), AFNI_brick_to_mri(), AFNI_fimmer_compute(), AFNI_func_overlay(), AFNI_make_widgets(), AFNI_newfunc_overlay(), AFNI_overlay(), AFNI_read_images(), AFNI_refashion_dataset(), AFNI_set_valabel(), AFNI_vnlist_func_overlay(), AFNI_vol2surf_func_overlay(), AIVVV_imseq_addto(), AREN_set_graybrick(), AREN_set_opabrick(), AREN_set_rgbbricks(), CALC_read_opts(), cx_scramble(), DC_main(), DRAW_fillin_CB(), FTOSH_getopts(), get_line_opt(), get_octant_clips(), ISQ_arrow_CB(), ISQ_drawing_EV(), ISQ_getimage(), ISQ_index_to_rgb(), ISQ_make_image(), ISQ_make_montage(), ISQ_manufacture_one(), ISQ_overlay(), ISQ_process_mri(), ISQ_saver_CB(), ISQ_statify_one(), main(), MCW_choose_CB(), memplot_to_RGB_sef(), MREN_rgb_to_colorbytes(), MREN_rgb_to_colorshorts(), MREN_set_graybytes(), MREN_set_opabytes(), MREN_set_rgbbytes(), MREN_set_rgbshorts(), mri_3dalign_one(), mri_3to_rgb(), MRI_5blur_inplace_3D(), mri_aff2d_byte(), mri_aff2d_rgb(), mri_affine_bicubic(), MRI_autobbox(), mri_automask_image(), mri_automask_imarr(), mri_brainormalize(), mri_cat2D(), mri_complex_abs(), mri_complex_phase(), mri_complex_to_pair(), mri_copy(), mri_cut_2D(), mri_cut_3D(), mri_data_pointer(), mri_drawemptyrectangle(), mri_drawfilledrectangle(), mri_drawline(), mri_drawtext(), mri_dup2D(), mri_dup2D_rgb2(), mri_dup2D_rgb3(), mri_dup2D_rgb4(), mri_dup2D_rgb_NN(), mri_edgize(), mri_equal(), mri_expand_2D(), mri_fft_complex(), mri_fix_data_pointer(), mri_flatten_rgb(), mri_flip3D(), mri_flippo(), mri_get_cmass_2D(), mri_get_cmass_3D(), mri_histobyte(), mri_histogram(), mri_histoshort_all(), mri_histoshort_nonneg(), mri_inflate_pbm(), mri_invert_inplace(), mri_isgray(), mri_lsqfit(), mri_max(), mri_maxabs(), mri_medianfilter(), mri_min(), mri_mult_to_float(), mri_multiply_complex(), mri_new_7D_generic(), mri_nsize(), mri_overlay_2D(), mri_pair_to_complex(), mri_percents(), mri_quantile(), mri_quantize(), mri_read_dicom(), mri_resize_NN(), mri_rgb_to_3byte(), mri_rgb_to_3float(), mri_rgb_transform_nD(), mri_rgba_composite_array(), mri_rota(), mri_rota_bilinear(), mri_rota_shear(), mri_scale_inplace(), mri_scale_to_float(), mri_scalize(), mri_scramble(), mri_sharpen(), mri_sharpen_rgb(), mri_shift2D_bilinear(), mri_shift_1D(), mri_short2mask(), mri_sobel(), mri_startup_lsqfit(), mri_stat_seq(), mri_swapbytes(), mri_threshold(), mri_to_byte(), mri_to_byte_scl(), mri_to_complex(), mri_to_complex_ext(), mri_to_float(), mri_to_mri(), mri_to_niml(), mri_to_rgb(), mri_to_rgba(), mri_to_short(), mri_to_short_sclip(), mri_to_XImage(), mri_transpose(), mri_transpose_byte(), mri_transpose_complex(), mri_transpose_float(), mri_transpose_int(), mri_transpose_rgbyte(), mri_transpose_short(), mri_uncat2D(), mri_warp3d_align_one(), mri_warp3D_cubic(), mri_warp3D_linear(), mri_warp3D_NN(), mri_warp3D_quintic(), mri_warp3D_set_womask(), mri_warp_bicubic(), mri_warp_bilinear(), mri_watershedize(), mri_write(), mri_write_7D(), mri_write_analyze(), mri_write_angif(), mri_write_ascii(), mri_write_jpg(), mri_write_pnm(), mri_zeropad_2D(), mri_zeropad_3D(), NUD_doall_CB(), NUD_rotate(), NUD_update_base(), partial_cliplevel(), PERMTEST_main(), PH_popup_image(), plot_graphs(), PLUGIN_imseq_getim(), PLUTO_imseq_addto(), PLUTO_imseq_popup(), process_NIML_MRI_IMAGE(), r_idisp_mri_image(), r_mri_read_dicom(), RCREND_draw_CB(), RCREND_imseq_getim(), RCREND_reload_func_dset(), REG_command_line(), REND_draw_CB(), REND_imseq_getim(), REND_reload_func_dset(), rgb_to_XImage_clever(), rgb_to_XImage_simple(), RIC_ToCardiacPhase(), RIC_ToRespPhase(), T3D_read_images(), text_graphs(), THD_cliplevel(), THD_get_brick_stats(), THD_open_mpeg(), THD_orient_guess(), THD_rota3D(), THD_rota3D_matvec(), THD_warp3D(), THD_zeropad(), ts_to_ftime(), UC_read_opts(), and VOLREG_main(). |
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string attached; may be NULL; might be filename
Definition at line 252 of file mrilib.h. |
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string attached; may be NULL; might be filename
Definition at line 137 of file mri_image.h.
Referenced by AFNI_fimmer_execute(), AFNI_fimmer_setort(), AFNI_fimmer_setref(), AFNI_rescan_timeseries_CB(), CORREL_main(), DELAY_main(), main(), MCW_choose_CB(), MCW_choose_timeseries(), mri_add_name(), mri_align_dfspace(), mri_free(), mri_move_guts(), mri_new_7D_generic(), mri_to_niml(), plot_graphs(), PLUTO_commandstring(), PLUTO_popup_image(), process_NIML_MRI_IMAGE(), r_idisp_mri_image(), and RCREND_imseq_getim(). |
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number of voxels total
Definition at line 247 of file mrilib.h.
Referenced by AFNI_finalize_read_1D_CB(), AFNI_func_overlay(), AFNI_gra_send_CB(), AFNI_newfunc_overlay(), AFNI_splashdown(), AFNI_ttatlas_overlay(), CALC_read_opts(), cx_scramble(), DRAW_fillin_CB(), EDIT_add_bricklist(), EDIT_substitute_brick(), GRA_refread_choose_CB(), HISTO_main(), ISQ_getimage(), ISQ_graymap_draw(), ISQ_index_to_rgb(), ISQ_overlay(), ISQ_process_mri(), ISQ_save_jpeg(), ISQ_saver_CB(), JPEG_matrix_gray(), main(), MAIN_workprocess(), MREN_rgb_to_colorbytes(), MREN_rgb_to_colorshorts(), mri_3dalign_one(), mri_3dalign_setup(), mri_3to_rgb(), MRI_autobbox(), mri_automask_image(), mri_automask_imarr(), mri_complex_abs(), mri_complex_phase(), mri_complex_to_pair(), mri_copy(), mri_delayed_lsqfit(), mri_dup2D(), mri_edit_image(), mri_entropy16(), mri_entropy8(), mri_equal(), mri_flatten(), mri_flatten_rgb(), mri_histobyte(), mri_histogram(), mri_histoshort_all(), mri_histoshort_nonneg(), mri_input_delay(), mri_invert_inplace(), mri_isgray(), mri_lsqfit(), mri_max(), mri_maxabs(), mri_min(), mri_mult_to_float(), mri_multiply_complex(), mri_new_7D_generic(), mri_pair_to_complex(), mri_percents(), mri_quantile(), mri_quantize(), mri_read(), mri_read_3D(), mri_read_dicom(), mri_rgb_to_3byte(), mri_rgb_to_3float(), mri_rgb_transform_nD(), mri_rgba_composite_array(), mri_scale_inplace(), mri_scale_to_float(), mri_scalize(), mri_sharpen_rgb(), mri_startup_lsqfit(), mri_swapbytes(), mri_threshold(), mri_to_byte(), mri_to_byte_scl(), mri_to_complex(), mri_to_float(), mri_to_mri_scl(), mri_to_niml(), mri_to_rgb(), mri_to_rgba(), mri_to_short(), mri_to_short_sclip(), mri_warp3d_align_one(), mri_warp3D_cubic(), mri_warp3D_quintic(), mri_warp_bicubic(), mri_write_7D(), mri_write_analyze(), mri_write_angif(), mri_write_jpg(), mri_write_pnm(), mri_write_raw(), niml_to_mri(), NUD_rotate(), PH_fakeim(), PLOT_matrix_gray(), PR_one_slice(), r_idisp_mri_image(), r_mri_read_dicom(), RCREND_draw_CB(), RCREND_overlay_ttatlas(), RCREND_reload_dataset(), RCREND_reload_func_dset(), read_dicom_image(), REND_draw_CB(), REND_overlay_ttatlas(), REND_reload_dataset(), REND_reload_func_dset(), RT_registration_2D_onevol(), RT_registration_2D_setup(), SPLASH_decodexx(), T3D_read_images(), THD_autobbox(), THD_cliplevel(), THD_fetch_1D(), THD_get_all_timeseries(), THD_get_brick_stats(), THD_init_datablock_brick(), THD_rota3D(), THD_rota3D_matvec(), and VOLREG_main(). |
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1st dimension of image
Definition at line 237 of file mrilib.h.
Referenced by adwarp_refashion_dataset(), AFNI_dataset_slice(), AFNI_faceup(), AFNI_fimmer_compute(), AFNI_finalize_read_1D_CB(), AFNI_func_overlay(), AFNI_gra_send_CB(), AFNI_make_widgets(), AFNI_overlay(), AFNI_read_images(), AFNI_refashion_dataset(), AFNI_set_valabel(), AFNI_splashup(), AIVVV_imseq_addto(), AREN_set_graybrick(), AREN_set_opabrick(), AREN_set_rgbbricks(), CALC_read_opts(), Computebmatrix(), conv_set_ref(), copy_bitvector(), corr_floatbit(), CORREL_main(), count_bitvector(), custom_filter(), cx_scramble(), DC_main(), disp_mri_imarr(), draw_image_line(), DSET2_func(), DSETN_func(), DT_read_opts(), equal_bitvector(), equal_bitvector_piece(), evolve_bitvector_array(), fill_node_list(), Form_R_Matrix(), FTOSH_getopts(), get_dfile_params(), get_line_opt(), get_octant_clips(), GRA_doshift(), GRA_fixup_xaxis(), GRA_redraw_overlay(), GRA_refread_choose_CB(), HISTO_main(), IJKAR_reader(), init_bitvector_array(), invert_bitvector(), invert_bitvector_piece(), ISQ_getimage(), ISQ_make_image(), ISQ_make_montage(), ISQ_process_mri(), ISQ_rowgraph_draw(), ISQ_save_jpeg(), ISQ_saver_CB(), JPEG_matrix_gray(), L1F_worker(), LSQ_worker(), main(), matrix_file_read(), MCW_choose_CB(), MCW_choose_timeseries(), memplot_to_RGB_sef(), MREN_set_graybytes(), MREN_set_opabytes(), MREN_set_rgbbytes(), MREN_set_rgbshorts(), mri_2dalign_one(), mri_2dalign_setup(), mri_3dalign_setup(), MRI_5blur_inplace_3D(), mri_aff2d_byte(), mri_aff2d_rgb(), mri_affine_bicubic(), mri_align_crao(), mri_align_dfspace(), MRI_autobbox(), mri_automask_image(), mri_brainormalize(), mri_cat2D(), mri_cut_2D(), mri_cut_3D(), mri_drawemptyrectangle(), mri_drawfilledrectangle(), mri_drawline(), mri_drawtext(), mri_dup2D(), mri_dup2D_rgb2(), mri_dup2D_rgb3(), mri_dup2D_rgb4(), mri_dup2D_rgb_NN(), mri_edgize(), mri_expand_2D(), mri_fft2D(), mri_fft_complex(), mri_filt_fft(), mri_flatten(), mri_flip3D(), mri_flippo(), mri_get_cmass_2D(), mri_get_cmass_3D(), mri_inflate_pbm(), mri_medianfilter(), mri_new_7D_generic(), mri_nsize(), mri_overlay_2D(), mri_percents(), mri_psinv(), mri_quantile(), mri_read_1D(), mri_resize(), mri_resize_NN(), mri_rgb_transform_nD(), mri_rota(), mri_rota_bilinear(), mri_rota_shear(), mri_rotate(), mri_rotate_bilinear(), mri_scramble(), mri_sharpen(), mri_shift2D_bilinear(), mri_shift_1D(), mri_short2mask(), mri_sobel(), mri_squareaspect(), mri_stat_seq(), mri_to_complex_ext(), mri_to_niml(), mri_to_XImage(), mri_transpose_byte(), mri_transpose_complex(), mri_transpose_float(), mri_transpose_int(), mri_transpose_rgbyte(), mri_transpose_short(), mri_uncat2D(), mri_warp3D_align_fitim(), mri_warp3d_align_one(), mri_warp3D_align_setup(), mri_warp3D_cubic(), mri_warp3D_get_delta(), mri_warp3D_linear(), mri_warp3D_NN(), mri_warp3D_quintic(), mri_warp3D_resize(), mri_warp_bicubic(), mri_warp_bilinear(), mri_watershedize(), mri_write(), mri_write_7D(), mri_write_analyze(), mri_write_angif(), mri_write_ascii(), mri_write_jpg(), mri_write_pnm(), mri_zeropad_2D(), mri_zeropad_3D(), normalize_floatvector(), NUD_rotate(), one_bitvector(), one_bitvector_piece(), open_MCW_imseq(), partial_cliplevel(), PERMTEST_main(), PH_loadim(), PH_redraw(), plot_graphs(), plot_image_surface(), PRIC_main(), process_NIML_MRI_IMAGE(), Process_Options(), quadrant_fimfunc(), r_idisp_mri_image(), r_mri_read_dicom(), randomize_bitvector(), randomize_bitvector_piece(), RCREND_cutout_blobs(), RCREND_reload_func_dset(), RCREND_reload_renderer(), RCREND_xhair_overlay(), RCREND_xhair_underlay(), read_dicom_image(), read_input_data(), read_nodes_file(), read_one_time_series(), read_sxyz_1D(), read_time_series(), REG_command_line(), REND_cutout_blobs(), REND_reload_func_dset(), REND_xhair_overlay(), REND_xhair_underlay(), rgb_to_XImage_clever(), rgb_to_XImage_simple(), RIC_CalcCoeffAB(), RIC_CorrectDataset(), RIC_ToCardiacPhase(), RIC_ToRespPhase(), ROIPLOT_main(), RT_fim_recurse(), sdata_from_1D(), set_node_list_data(), SFIM_getopts(), spearman_fimfunc(), STAVG_main(), SUMA_Load1DDset(), SUMA_Load_Surface_Object_eng(), SUMA_OpenDrawnROI_1D(), SUMA_Read_Color_Map_1D(), SUMA_Read_IRGB_file(), SUMA_read_ppm(), SUMA_readFScurv(), SUMA_ReadSegDO(), SUMA_VEC_Read(), sxyz_1D_to_nlist(), T3D_read_images(), text_graphs(), TFIM_getopts(), THD_fetch_1D(), THD_load_1D(), THD_open_1D(), THD_open_mpeg(), THD_orient_guess(), THD_rota3D(), THD_rota3D_matvec(), TS_reader(), ts_to_ftime(), UC_read_opts(), verify_parser_expr(), VL_command_line(), write_images(), zero_bitvector(), and zero_bitvector_piece(). |
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2nd dimension of image (1 for 1D image)
Definition at line 238 of file mrilib.h.
Referenced by adwarp_refashion_dataset(), AFNI_dataset_slice(), AFNI_faceup(), AFNI_fimmer_compute(), AFNI_func_overlay(), AFNI_gra_send_CB(), AFNI_make_widgets(), AFNI_overlay(), AFNI_read_images(), AFNI_refashion_dataset(), AFNI_splashup(), AIVVV_imseq_addto(), AREN_set_graybrick(), AREN_set_opabrick(), AREN_set_rgbbricks(), conv_set_ref(), cx_scramble(), DC_main(), draw_image_line(), DT_read_opts(), FTOSH_getopts(), get_dfile_params(), get_line_opt(), get_octant_clips(), ISQ_getimage(), ISQ_make_image(), ISQ_make_montage(), ISQ_process_mri(), ISQ_rowgraph_draw(), ISQ_save_jpeg(), ISQ_saver_CB(), JPEG_matrix_gray(), main(), matrix_file_read(), MCW_choose_CB(), MCW_choose_timeseries(), memplot_to_RGB_sef(), MREN_set_graybytes(), MREN_set_opabytes(), MREN_set_rgbbytes(), MREN_set_rgbshorts(), mri_2dalign_one(), mri_2dalign_setup(), mri_3dalign_setup(), MRI_5blur_inplace_3D(), mri_aff2d_byte(), mri_aff2d_rgb(), mri_affine_bicubic(), mri_align_crao(), mri_align_dfspace(), MRI_autobbox(), mri_automask_image(), mri_brainormalize(), mri_cat2D(), mri_cut_2D(), mri_cut_3D(), mri_drawemptyrectangle(), mri_drawfilledrectangle(), mri_drawline(), mri_drawtext(), mri_dup2D(), mri_dup2D_rgb2(), mri_dup2D_rgb3(), mri_dup2D_rgb4(), mri_dup2D_rgb_NN(), mri_edgize(), mri_expand_2D(), mri_fft2D(), mri_fft_complex(), mri_filt_fft(), mri_flatten(), mri_flip3D(), mri_flippo(), mri_get_cmass_2D(), mri_get_cmass_3D(), mri_inflate_pbm(), mri_medianfilter(), mri_new_7D_generic(), mri_nsize(), mri_overlay_2D(), mri_percents(), mri_psinv(), mri_quantile(), mri_read_1D(), mri_resize(), mri_resize_NN(), mri_rgb_transform_nD(), mri_rota(), mri_rota_bilinear(), mri_rota_shear(), mri_rotate(), mri_rotate_bilinear(), mri_scramble(), mri_sharpen(), mri_shift2D_bilinear(), mri_short2mask(), mri_sobel(), mri_squareaspect(), mri_stat_seq(), mri_to_complex_ext(), mri_to_niml(), mri_to_XImage(), mri_transpose_byte(), mri_transpose_complex(), mri_transpose_float(), mri_transpose_int(), mri_transpose_rgbyte(), mri_transpose_short(), mri_uncat2D(), mri_warp3d_align_one(), mri_warp3D_align_setup(), mri_warp3D_cubic(), mri_warp3D_get_delta(), mri_warp3D_linear(), mri_warp3D_NN(), mri_warp3D_quintic(), mri_warp3D_resize(), mri_warp_bicubic(), mri_warp_bilinear(), mri_watershedize(), mri_write(), mri_write_7D(), mri_write_analyze(), mri_write_angif(), mri_write_ascii(), mri_write_jpg(), mri_write_pnm(), mri_zeropad_2D(), mri_zeropad_3D(), NUD_rotate(), open_MCW_imseq(), partial_cliplevel(), PH_loadim(), PH_redraw(), plot_graphs(), plot_image_surface(), process_NIML_MRI_IMAGE(), quadrant_fimfunc(), r_idisp_mri_image(), r_mri_read_dicom(), RCREND_cutout_blobs(), RCREND_reload_func_dset(), RCREND_reload_renderer(), RCREND_xhair_overlay(), RCREND_xhair_underlay(), read_dicom_image(), read_input_data(), read_nodes_file(), read_one_time_series(), read_sxyz_1D(), read_time_series(), REG_command_line(), REND_cutout_blobs(), REND_reload_func_dset(), REND_xhair_overlay(), REND_xhair_underlay(), rgb_to_XImage_clever(), rgb_to_XImage_simple(), RIC_CalcCoeffAB(), RIC_CorrectDataset(), ROIPLOT_main(), RT_fim_recurse(), sdata_from_1D(), set_node_list_data(), SFIM_getopts(), spearman_fimfunc(), SUMA_Load1DDset(), SUMA_Load_Surface_Object_eng(), SUMA_OpenDrawnROI_1D(), SUMA_Read_Color_Map_1D(), SUMA_Read_IRGB_file(), SUMA_read_ppm(), SUMA_readFScurv(), SUMA_ReadSegDO(), SUMA_VEC_Read(), sxyz_1D_to_nlist(), T3D_read_images(), TFIM_getopts(), THD_fetch_1D(), THD_load_1D(), THD_open_1D(), THD_open_mpeg(), THD_orient_guess(), THD_rota3D(), THD_rota3D_matvec(), ts_to_ftime(), UC_read_opts(), VL_command_line(), and write_images(). |
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3rd dimension of image (1 for 2D image)
Definition at line 239 of file mrilib.h.
Referenced by AIVVV_imseq_addto(), AREN_set_graybrick(), AREN_set_opabrick(), AREN_set_rgbbricks(), get_octant_clips(), main(), MREN_set_graybytes(), MREN_set_opabytes(), MREN_set_rgbbytes(), MREN_set_rgbshorts(), mri_3dalign_setup(), MRI_5blur_inplace_3D(), MRI_autobbox(), mri_automask_image(), mri_brainormalize(), mri_cut_3D(), mri_expand_2D(), mri_flip3D(), mri_get_cmass_3D(), mri_medianfilter(), mri_new_7D_generic(), mri_short2mask(), mri_to_niml(), mri_warp3d_align_one(), mri_warp3D_align_setup(), mri_warp3D_cubic(), mri_warp3D_get_delta(), mri_warp3D_linear(), mri_warp3D_NN(), mri_warp3D_quintic(), mri_warp3D_resize(), mri_watershedize(), mri_write_1D(), mri_write_7D(), mri_write_analyze(), mri_write_ascii(), mri_write_pnm(), mri_zeropad_3D(), NUD_rotate(), partial_cliplevel(), process_NIML_MRI_IMAGE(), r_idisp_mri_image(), r_mri_read_dicom(), RCREND_cutout_blobs(), RCREND_overlay_ttatlas(), RCREND_reload_func_dset(), RCREND_reload_renderer(), RCREND_xhair_overlay(), RCREND_xhair_underlay(), REND_cutout_blobs(), REND_overlay_ttatlas(), REND_reload_func_dset(), REND_xhair_overlay(), REND_xhair_underlay(), THD_orient_guess(), THD_rota3D(), THD_rota3D_matvec(), and VL_command_line(). |
| int MRI_IMAGE::pixel_size
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bytes per pixel
Definition at line 248 of file mrilib.h.
Referenced by AFNI_splashdown(), AIVVV_imseq_addto(), EDIT_add_bricklist(), EDIT_substitute_brick(), main(), mri_3dalign_setup(), mri_copy(), mri_cut_2D(), mri_cut_3D(), mri_entropy16(), mri_entropy8(), mri_equal(), mri_expand_2D(), mri_flip3D(), mri_input_delay(), mri_new_7D_generic(), mri_overlay_2D(), mri_read(), mri_read_3D(), mri_read_dicom(), mri_resize_NN(), mri_warp3d_align_one(), mri_write(), mri_write_7D(), mri_write_analyze(), mri_write_raw(), niml_to_mri(), r_idisp_mri_image(), r_mri_read_dicom(), read_dicom_image(), RT_registration_2D_onevol(), RT_registration_2D_setup(), T3D_read_images(), THD_init_datablock_brick(), and THD_zeropad(). |
| int MRI_IMAGE::was_swapped
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Definition at line 285 of file mrilib.h.
Referenced by main(), mri_input_delay(), mri_new_7D_generic(), mri_read(), mri_read3D_analyze75(), mri_read_3D(), mri_read_analyze75(), mri_read_dicom(), mri_read_ge4(), mri_read_siemens(), r_idisp_mri_image(), r_mri_read_dicom(), read_dicom_image(), and T3D_read_images(). |
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spatial origin of axis
Definition at line 261 of file mrilib.h.
Referenced by FD_brick_to_series(), GRA_redraw_overlay(), main(), mri_brainormalize(), mri_new_7D_generic(), mri_to_niml(), mri_write_analyze(), niml_to_mri(), plot_graphs(), r_idisp_mri_image(), r_mri_read_dicom(), read_dicom_image(), THD_extract_many_series(), and THD_extract_series(). |
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spatial origin of axis
Definition at line 263 of file mrilib.h.
Referenced by main(), mri_brainormalize(), mri_new_7D_generic(), mri_read(), mri_read_ge4(), mri_to_niml(), mri_write_analyze(), niml_to_mri(), r_idisp_mri_image(), r_mri_read_dicom(), and read_dicom_image(). |
The documentation for this struct was generated from the following files:
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