Doxygen Source Code Documentation
SUMA_3dCRUISEtoAFNI.c File Reference
#include "SUMA_suma.h"
Go to the source code of this file.
Functions | |
void | usage_3dCRUISEtoAFNI (SUMA_GENERIC_ARGV_PARSE *ps) |
SUMA_GENERIC_PROG_OPTIONS_STRUCT * | SUMA_3dCRUISEtoAFNI_ParseInput (char *argv[], int argc, SUMA_GENERIC_ARGV_PARSE *ps) |
int | main (int argc, char *argv[]) |
Variables | |
SUMA_SurfaceViewer * | SUMAg_cSV = NULL |
SUMA_SurfaceViewer * | SUMAg_SVv = NULL |
int | SUMAg_N_SVv = 0 |
SUMA_DO * | SUMAg_DOv = NULL |
int | SUMAg_N_DOv = 0 |
SUMA_CommonFields * | SUMAg_CF = NULL |
Function Documentation
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\** File : SUMA.c
Input paramters :
Definition at line 86 of file SUMA_3dCRUISEtoAFNI.c. References argc, SUMA_GENERIC_PROG_OPTIONS_STRUCT::debug, DSET_delete, DSET_write, EDIT_empty_copy(), SUMA_GENERIC_PROG_OPTIONS_STRUCT::in_name, LocalHead, SUMA_3dCRUISEtoAFNI_ParseInput(), SUMA_Alloc_DisplayObject_Struct(), SUMA_Boolean, SUMA_error_message(), SUMA_free, SUMA_Free_CommonFields(), SUMA_Free_Generic_Prog_Options_Struct(), SUMA_LH, SUMA_mainENTRY, SUMA_MAX_DISPLAYABLE_OBJECTS, SUMA_OpenDX_Read_CruiseVolHead(), SUMA_Parse_IO_Args(), SUMA_SL_Err, SUMA_STANDALONE_INIT, tross_Make_History(), and usage_3dCRUISEtoAFNI().
00087 {/* Main */ 00088 static char FuncName[]={"3dCRUISEtoAFNI"}; 00089 SUMA_GENERIC_PROG_OPTIONS_STRUCT *Opt; 00090 SUMA_GENERIC_ARGV_PARSE *ps=NULL; 00091 SUMA_OPEN_DX_STRUCT **dx = NULL; 00092 THD_3dim_dataset *dset=NULL; 00093 char *sto3d = NULL; 00094 SUMA_Boolean LocalHead = NOPE; 00095 00096 SUMA_mainENTRY; 00097 SUMA_STANDALONE_INIT; 00098 00099 /* Allocate space for DO structure */ 00100 SUMAg_DOv = SUMA_Alloc_DisplayObject_Struct (SUMA_MAX_DISPLAYABLE_OBJECTS); 00101 ps = SUMA_Parse_IO_Args(argc, argv, ""); 00102 00103 if (argc < 2) { 00104 usage_3dCRUISEtoAFNI(ps); 00105 exit (1); 00106 } 00107 00108 Opt = SUMA_3dCRUISEtoAFNI_ParseInput (argv, argc, ps); 00109 00110 if (Opt->debug > 2) LocalHead = YUP; 00111 00112 dset = EDIT_empty_copy( NULL ) ; 00113 tross_Make_History( "3dCRUISEtoAFNI" , argc,argv , dset) ; 00114 if (!(sto3d = SUMA_OpenDX_Read_CruiseVolHead(Opt->in_name, dset, 1))) { 00115 if (Opt->debug) SUMA_SL_Err("Failed in SUMA_OpenDX_Read_CruiseVolHead"); 00116 exit(1); 00117 } 00118 if (dset) { 00119 SUMA_LH("Writing Dset"); 00120 DSET_write(dset) ; 00121 if (LocalHead) { 00122 fprintf(SUMA_STDERR,"%s: Can use the following command to create dset with to3d:\n%s\n", FuncName,sto3d); 00123 } 00124 } else { 00125 /* the olde way */ 00126 if (system(sto3d)) { 00127 fprintf(SUMA_STDERR, "Error %s: Failed while executing shell command:\n%s\n" 00128 "Check to3d's error messages, and disk writing permissions.\n", FuncName, sto3d); 00129 } 00130 } 00131 00132 00133 00134 if (sto3d) SUMA_free(sto3d); sto3d = NULL; 00135 if (dset) { DSET_delete(dset); dset = NULL; } 00136 if (Opt) Opt = SUMA_Free_Generic_Prog_Options_Struct(Opt); 00137 if (!SUMA_Free_CommonFields(SUMAg_CF)) SUMA_error_message(FuncName,"SUMAg_CF Cleanup Failed!",1); 00138 exit(0); 00139 00140 } |
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Definition at line 32 of file SUMA_3dCRUISEtoAFNI.c. References SUMA_GENERIC_ARGV_PARSE::arg_checked, argc, SUMA_GENERIC_PROG_OPTIONS_STRUCT::debug, SUMA_GENERIC_PROG_OPTIONS_STRUCT::in_name, LocalHead, SUMA_Alloc_Generic_Prog_Options_Struct(), SUMA_Boolean, SUMA_ENTRY, SUMA_RETURN, SUMA_SKIP_COMMON_OPTIONS, and usage_3dCRUISEtoAFNI(). Referenced by main().
00033 { 00034 static char FuncName[]={"SUMA_BrainWrap_ParseInput"}; 00035 SUMA_GENERIC_PROG_OPTIONS_STRUCT *Opt=NULL; 00036 int kar; 00037 SUMA_Boolean brk; 00038 SUMA_Boolean LocalHead = NOPE; 00039 00040 SUMA_ENTRY; 00041 00042 Opt = SUMA_Alloc_Generic_Prog_Options_Struct(); 00043 kar = 1; 00044 brk = NOPE; 00045 while (kar < argc) { /* loop accross command ine options */ 00046 /*fprintf(stdout, "%s verbose: Parsing command line...\n", FuncName);*/ 00047 if (strcmp(argv[kar], "-h") == 0 || strcmp(argv[kar], "-help") == 0) { 00048 usage_3dCRUISEtoAFNI(ps); 00049 exit (0); 00050 } 00051 00052 SUMA_SKIP_COMMON_OPTIONS(brk, kar); 00053 00054 if (!brk && (strcmp(argv[kar], "-input") == 0)) { 00055 kar ++; 00056 if (kar >= argc) { 00057 fprintf (SUMA_STDERR, "need argument after -input\n"); 00058 exit (1); 00059 } 00060 Opt->in_name = argv[kar]; 00061 brk = YUP; 00062 } 00063 if (!brk && (strcmp(argv[kar], "-debug") == 0)) { 00064 kar ++; 00065 if (kar >= argc) { 00066 fprintf (SUMA_STDERR, "need integer argument after -debug\n"); 00067 exit (1); 00068 } 00069 Opt->debug = atoi(argv[kar]); 00070 brk = YUP; 00071 } 00072 00073 if (!brk && !ps->arg_checked[kar]) { 00074 fprintf (SUMA_STDERR,"Error %s:\nOption %s not understood. Try -help for usage\n", FuncName, argv[kar]); 00075 exit (1); 00076 } else { 00077 brk = NOPE; 00078 kar ++; 00079 } 00080 } 00081 00082 SUMA_RETURN(Opt); 00083 } |
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Definition at line 11 of file SUMA_3dCRUISEtoAFNI.c. References i, SUMA_free, SUMA_help_basics(), SUMA_help_IO_Args(), and SUMA_New_Additions(). Referenced by main(), and SUMA_3dCRUISEtoAFNI_ParseInput().
00012 { 00013 static char FuncName[]={"usage_3dCRUISEtoAFNI"}; 00014 char * s = NULL, *sio=NULL, *st = NULL, *sts = NULL; 00015 int i; 00016 s = SUMA_help_basics(); 00017 sio = SUMA_help_IO_Args(ps); 00018 printf ( "\n" 00019 "Usage: 3dCRUISEtoAFNI -input CRUISE_HEADER.dx\n" 00020 " Converts a CRUISE dataset defined by a heder in OpenDX format\n" 00021 " The conversion is based on sample data and information\n" 00022 " provided by Aaron Carass from JHU's IACL iacl.ece.jhu.edu\n" 00023 "%s" 00024 "%s" 00025 "\n", sio, s); 00026 SUMA_free(s); s = NULL; SUMA_free(st); st = NULL; SUMA_free(sio); sio = NULL; 00027 s = SUMA_New_Additions(0, 1); printf("%s\n", s);SUMA_free(s); s = NULL; 00028 printf(" Ziad S. Saad SSCC/NIMH/NIH ziad@nih.gov \n"); 00029 exit(0); 00030 } |
Variable Documentation
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Global pointer to structure containing info common to all viewers Definition at line 9 of file SUMA_3dCRUISEtoAFNI.c. |
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Global pointer to current Surface Viewer structure Definition at line 3 of file SUMA_3dCRUISEtoAFNI.c. |
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Global pointer to Displayable Object structure vector Definition at line 7 of file SUMA_3dCRUISEtoAFNI.c. |
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Number of DOs stored in DOv Definition at line 8 of file SUMA_3dCRUISEtoAFNI.c. |
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Number of SVs realized by X Definition at line 6 of file SUMA_3dCRUISEtoAFNI.c. |
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Global pointer to the vector containing the various Surface Viewer Structures SUMAg_SVv contains SUMA_MAX_SURF_VIEWERS structures Definition at line 4 of file SUMA_3dCRUISEtoAFNI.c. |