00001 /*****************************************************************************
00002    Major portions of this software are copyrighted by the Medical College
00003    of Wisconsin, 1994-2000, and are released under the Gnu General Public
00004    License, Version 2.  See the file README.Copyright for details.
00005 ******************************************************************************/
00006 
00007 #ifndef _MCW_TO3D_HEADER_
00008 #define _MCW_TO3D_HEADER_
00009 
00010 #include "mrilib.h"
00011 #include "imseq.h"
00012 #include "killer.h"
00013 #include "afni_warp.h"
00014 #include "mcw_glob.h"
00015 
00016 #include <Xm/SeparatoG.h>
00017 
00018 #include <Xm/Display.h>
00019 #include <stdlib.h>
00020 #include <ctype.h>
00021 #include <unistd.h>
00022 
00023 #define NO_NAMES
00024 
00025 typedef struct {
00026    int   xorient,yorient,zorient , voxshape , voxcontig ,
00027          xyz_centered , view_type ,
00028          dataset_type , anatomy_type , function_type , nx,ny,nz ;
00029 
00030    float fov , xsize,ysize,zsize , zspacing ,
00031          xorigin,yorigin,zorigin ;
00032 
00033    char dataset_name[THD_MAX_NAME] ,
00034         short_label1[THD_MAX_LABEL] , short_label2[THD_MAX_LABEL] ;
00035 
00036    char dataset_type_string[THD_MAX_NAME] ,
00037         anatomy_type_string[THD_MAX_NAME] ,
00038         function_type_string[THD_MAX_NAME] ,
00039         geometry_parent_filename[THD_MAX_NAME] ,
00040         anatomy_parent_filename[THD_MAX_NAME] ,
00041         output_filename[THD_MAX_NAME] ,
00042         session_filename[THD_MAX_NAME] ;
00043 
00044    char geometry_dataname[THD_MAX_NAME] ,
00045         anatomy_dataname[THD_MAX_NAME] ;
00046 
00047    int  nimage , nvals , nosave ;
00048 
00049    MCW_idcode anatomy_parent_idcode ;
00050 
00051    int   need_stat_aux ;
00052    float stat_aux[MAX_STAT_AUX] ;
00053 
00054    int   xincode , yincode , zincode ;
00055    float xin_bot,xin_top , yin_bot,yin_top , zin_bot,zin_top ;
00056 
00057    int ntt , nzz , t_then_z , tunits ;
00058    float TR ;
00059    float *tpattern ;
00060 
00061    float Torg ;   /* 23 Feb 2005 */
00062 } to3d_data ;
00063 
00064 #define INCODE_NONE -666
00065 #define INCODE_FOV   100
00066 #define INCODE_SLAB  200
00067 
00068 #define ORCODE(aa)                         \
00069   ( ((aa)=='R'||(aa)=='r') ? ORI_R2L_TYPE  \
00070    :((aa)=='L'||(aa)=='l') ? ORI_L2R_TYPE  \
00071    :((aa)=='P'||(aa)=='p') ? ORI_P2A_TYPE  \
00072    :((aa)=='A'||(aa)=='a') ? ORI_A2P_TYPE  \
00073    :((aa)=='I'||(aa)=='i') ? ORI_I2S_TYPE  \
00074    :((aa)=='S'||(aa)=='s') ? ORI_S2I_TYPE : ILLEGAL_TYPE )
00075 
00076 typedef struct {
00077    Widget topshell , topform ;
00078 
00079    MCW_arrowval * xorient_av , * yorient_av , * zorient_av ,
00080                 * xsize_av   , * ysize_av   , * zsize_av   ,
00081                 * xorigin_av , * yorigin_av , * zorigin_av ,
00082                 * fov_av     ,                * zspacing_av  ;
00083    MCW_bbox     * voxshape_bbox , * voxcontig_bbox , * centered_bbox ;
00084 
00085    Widget region_separator ;
00086 
00087    Widget
00088 #ifndef NO_NAMES
00089           dataset_name_label    , dataset_name_textfield    ,
00090           short_label1_label    , short_label1_textfield    ,
00091           short_label2_label    , short_label2_textfield    ,
00092 #endif
00093           geometry_parent_label , geometry_parent_textfield ,
00094           anatomy_parent_label  , anatomy_parent_textfield   ;
00095 
00096 #ifndef NO_NAMES
00097    Widget geometry_dataname_label , geometry_dataname_textfield ,
00098           anatomy_dataname_label  , anatomy_dataname_textfield  ;
00099 #endif
00100 
00101    MCW_arrowval * dataset_type_av , * function_type_av , * anatomy_type_av ;
00102 
00103    Widget output_file_label , output_file_textfield ;
00104    Widget session_file_label , session_file_textfield ;
00105 
00106    Widget action_frame , action_rowcol ,
00107           button_help_pb , open_view_pb , save_file_pb , quit_pb ;
00108    Widget swap_pb ;  /* 14 Sep 1998 */
00109 
00110    /** April 1996: new widgets **/
00111 
00112    Widget       xorigin_label , yorigin_label , zorigin_label ;
00113    MCW_arrowval * view_type_av ;
00114    Widget       stat_aux_label , stat_aux_textfield , datum_label , TR_label ;
00115 
00116    /** Miscellaneous other stuff */
00117 
00118    MCW_DC    * dc ;
00119    MCW_imseq * seq ;
00120 
00121    int good ;
00122 } to3d_widget_set ;
00123 
00124 #define T3D_NAME_WIDTH   25
00125 #define T3D_FORM_SPACING 11
00126 
00127 static char orbuf[2] ;
00128 #define SET_ORIGIN_LABEL(ww,cc)           \
00129    ( orbuf[1] = '\0' ,                    \
00130      orbuf[0] = ORIENT_typestr[(cc)][0] , \
00131      MCW_set_widget_label((ww),orbuf) )
00132 
00133 /*-----------------------------------------------------------------*/
00134 
00135 static char * T3D_voxshape_label[3] = {
00136    "cubical" , "square" , "irregular"
00137 } ;
00138 
00139 #define VOXSHAPE_CUBICAL   1
00140 #define VOXSHAPE_SQUARE    2
00141 #define VOXSHAPE_IRREGULAR 4
00142 
00143 static char * T3D_voxcontig_label[3] = {
00144    "contiguous" , "unif.noncontig" , "irreg.noncontig" } ;
00145 
00146 #define VOXCONTIG_YES   1
00147 #define VOXCONTIG_UNIF  2
00148 #define VOXCONTIG_IRREG 4
00149 
00150 static char * T3D_centered_label[3] = {
00151   "x axis centered" , "y axis centered" , "z axis centered" } ;
00152 
00153 #define XCENTERED  1
00154 #define YCENTERED  2
00155 #define ZCENTERED  4
00156 
00157 /*-----------------------------------------------------------------*/
00158 
00159 #define NCOLOVR 2
00160 static char * FD_colovr[NCOLOVR] = { "yellow"  , "cyan" } ;
00161 
00162 #define NGRAY 80   /* default for -ncolor */
00163 #define GAMMA 1.0  /* default for -gamma  */
00164 
00165 /*-----------------------------------------------------------------*/
00166 
00167 void T3D_create_widgets(void) ;
00168 void T3D_read_images(void) ;
00169 void T3D_setup_stat_aux(void) ;
00170 
00171 void T3D_stat_aux_CB  (Widget, XtPointer, XtPointer );
00172 void T3D_voxshape_CB  (Widget, XtPointer, XtPointer );
00173 void T3D_voxcontig_CB (Widget, XtPointer, XtPointer );
00174 void T3D_centered_CB  (Widget, XtPointer, XtPointer );
00175 void T3D_open_view_CB (Widget, XtPointer, XtPointer );
00176 void T3D_save_file_CB (Widget, XtPointer, XtPointer );
00177 void T3D_quit_CB      (Widget, XtPointer, XtPointer );
00178 void T3D_swap_CB      (Widget, XtPointer, XtPointer );
00179 
00180 void T3D_geometry_parent_CB(Widget, XtPointer, XtPointer );
00181 void T3D_anatomy_parent_CB (Widget, XtPointer, XtPointer );
00182 void T3D_pointer_leave_EV  (Widget, XtPointer, XEvent * , Boolean * ) ;
00183 
00184 void T3D_imseq_CB( MCW_imseq * , FD_brick * , ISQ_cbs * ) ;
00185 
00186 XtPointer T3D_getim( int , int , FD_brick * ) ;
00187 
00188 #define RESET_QUIT T3D_quit_CB(NULL,NULL,NULL)
00189 
00190 char * T3D_text_display( MCW_arrowval * , XtPointer ) ;
00191 
00192 void    T3D_initialize_user_data(void) ;
00193 Boolean T3D_check_data(Boolean) ;
00194 
00195 void T3D_orient_av_CB ( MCW_arrowval * , XtPointer ) ;
00196 void T3D_origin_av_CB ( MCW_arrowval * , XtPointer ) ;
00197 void T3D_fov_av_CB    ( MCW_arrowval * , XtPointer ) ;
00198 void T3D_size_av_CB   ( MCW_arrowval * , XtPointer ) ;
00199 void T3D_type_av_CB   ( MCW_arrowval * , XtPointer ) ;
00200 
00201 void T3D_set_dependent_geometries(void) ;
00202 void T3D_widgets_to_data(void) ;
00203 void T3D_data_to_widgets(void) ;
00204 
00205 void T3D_poperr(char *,char *) ;
00206 
00207 void T3D_fix_dataset_dimen(void) ;
00208 void Syntax() ;
00209 
00210 void AFNI_load_defaults( Widget ) ;
00211 
00212 int decode_location( char * str , float * val , int * dcode ) ;
00213 
00214 void T3D_check_outliers(int) ;  /* 15 Aug 2001 */
00215 
00216 static int   INIT_ngray ;
00217 static float INIT_gamma ;
00218 static float INIT_fov ;
00219 
00220 #endif /* _MCW_TO3D_HEADER_ */