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opts_t Struct Reference

#include <Imon.h>


Data Fields

char * start_file
char * start_dir
char * dicom_glob
char * sp
char * gert_outdir
char ** argv
int argc
int nt
int nice
int pause
int debug
int gert_reco
int quit
int use_dicom
int dicom_org
int rt
int swap
int rev_bo
char * host
string_list drive_list
string_list rt_list
char * gpar_file
char * oset_file
char * spec_file
char * sv_file
char * surf_xyz_1D_file
char * sdata_file_1D
char * sdata_file_niml
char * cmask_cmd
char * data_expr
char * map_str
char * datum_str
char * f_index_str
char * snames [S2V_MAX_SURFS]
int sxyz_ori_gpar
int dnode
int dvox
int noscale
int f_steps
float f_p1_fr
float f_pn_fr
float f_p1_mm
float f_pn_mm
char * gpar_file
char * outfile_1D
char * outfile_niml
char * spec_file
char * sv_file
char * cmask_cmd
char * map_str
char * snames [V2S_MAX_SURFS]
int gp_index
int no_head
int skip_cols
int first_node
int last_node
int use_norms
float norm_len
int norm_dir
char * f_index_str
v2s_oob_t oob
v2s_oob_t oom
func_t F
char * spec_file
char * sv_file
char * out_1D_file
char * cmask_cmd
char * nodes_1D_file
char * surf_names [ST_MAX_SURFS]
int info

Field Documentation

int opts_t::argc
 

Definition at line 100 of file Imon.h.

Referenced by ART_send_control_info(), idisp_hf_opts_t(), idisp_opts_t(), and init_options().

char** opts_t::argv
 

Definition at line 99 of file Imon.h.

Referenced by ART_send_control_info(), idisp_hf_opts_t(), idisp_opts_t(), and init_options().

char* opts_t::cmask_cmd
 

Definition at line 88 of file SUMA_SurfMeasures.h.

char* opts_t::cmask_cmd
 

Definition at line 25 of file SUMA_3dVol2Surf.h.

char* opts_t::cmask_cmd
 

Definition at line 46 of file SUMA_3dSurf2Vol.h.

Referenced by disp_opts_t(), get_cmask(), init_options(), init_opts_t(), validate_datasets(), and validate_options().

char* opts_t::data_expr
 

Definition at line 47 of file SUMA_3dSurf2Vol.h.

Referenced by disp_opts_t(), init_options(), validate_options(), and verify_parser_expr().

char* opts_t::datum_str
 

Definition at line 49 of file SUMA_3dSurf2Vol.h.

Referenced by disp_opts_t(), init_options(), and set_smap_opts().

int opts_t::debug
 

Definition at line 92 of file SUMA_SurfMeasures.h.

Referenced by all_mappable_surfs(), compute_face_vols(), compute_node_vols(), disp_opts_t(), fill_node_list(), fill_SUMA_structs(), final_clean_up(), final_cleanup(), get_cmask(), get_surf_data(), get_surf_measures(), idisp_hf_opts_t(), idisp_opts_t(), init_options(), main(), read_nodes_file(), read_surf_files(), read_sxyz_1D(), sdata_from_1D(), set_smap_opts(), spec2SUMA(), surf_triangle_match(), validate_datasets(), validate_option_lists(), validate_options(), verify_parser_expr(), verify_surf_t(), and write_output().

char* opts_t::dicom_glob
 

Definition at line 96 of file Imon.h.

Referenced by idisp_opts_t(), and init_options().

int opts_t::dicom_org
 

Definition at line 108 of file Imon.h.

Referenced by init_options(), and read_ge_files().

int opts_t::dnode
 

Definition at line 93 of file SUMA_SurfMeasures.h.

Referenced by compute_face_vols(), compute_node_areas(), compute_node_vols(), disp_opts_t(), init_options(), init_opts_t(), set_smap_opts(), and write_output().

string_list opts_t::drive_list
 

Definition at line 115 of file Imon.h.

Referenced by ART_send_control_info(), idisp_hf_opts_t(), idisp_opts_t(), and init_options().

int opts_t::dvox
 

Definition at line 55 of file SUMA_3dSurf2Vol.h.

Referenced by disp_opts_t(), init_options(), and set_smap_opts().

func_t opts_t::F
 

Definition at line 84 of file SUMA_SurfMeasures.h.

Referenced by init_options(), init_opts_t(), and validate_options().

char* opts_t::f_index_str
 

Definition at line 38 of file SUMA_3dVol2Surf.h.

char* opts_t::f_index_str
 

Definition at line 50 of file SUMA_3dSurf2Vol.h.

Referenced by disp_opts_t(), init_options(), and set_smap_opts().

float opts_t::f_p1_fr
 

Definition at line 40 of file SUMA_3dVol2Surf.h.

Referenced by disp_opts_t(), init_options(), and set_smap_opts().

float opts_t::f_p1_mm
 

Definition at line 42 of file SUMA_3dVol2Surf.h.

Referenced by disp_opts_t(), init_options(), and set_smap_opts().

float opts_t::f_pn_fr
 

Definition at line 41 of file SUMA_3dVol2Surf.h.

Referenced by disp_opts_t(), init_options(), and set_smap_opts().

float opts_t::f_pn_mm
 

Definition at line 43 of file SUMA_3dVol2Surf.h.

Referenced by disp_opts_t(), init_options(), and set_smap_opts().

int opts_t::f_steps
 

Definition at line 39 of file SUMA_3dVol2Surf.h.

Referenced by disp_opts_t(), init_options(), and set_smap_opts().

int opts_t::first_node
 

Definition at line 31 of file SUMA_3dVol2Surf.h.

Referenced by disp_opts_t(), init_options(), and set_smap_opts().

char* opts_t::gert_outdir
 

Definition at line 98 of file Imon.h.

Referenced by create_gert_reco(), create_gert_script(), idisp_hf_opts_t(), idisp_opts_t(), and init_options().

int opts_t::gert_reco
 

Definition at line 105 of file Imon.h.

Referenced by idisp_hf_opts_t(), idisp_opts_t(), init_options(), and show_run_stats().

int opts_t::gp_index
 

Definition at line 28 of file SUMA_3dVol2Surf.h.

Referenced by disp_opts_t(), init_options(), set_smap_opts(), and validate_datasets().

char* opts_t::gpar_file
 

Definition at line 20 of file SUMA_3dVol2Surf.h.

char* opts_t::gpar_file
 

Definition at line 39 of file SUMA_3dSurf2Vol.h.

Referenced by disp_opts_t(), init_options(), and validate_datasets().

char* opts_t::host
 

Definition at line 114 of file Imon.h.

Referenced by idisp_hf_opts_t(), idisp_opts_t(), and init_options().

int opts_t::info
 

Definition at line 91 of file SUMA_SurfMeasures.h.

Referenced by disp_opts_t(), get_surf_measures(), init_options(), validate_option_lists(), and write_output().

int opts_t::last_node
 

Definition at line 32 of file SUMA_3dVol2Surf.h.

Referenced by disp_opts_t(), init_options(), and set_smap_opts().

char* opts_t::map_str
 

Definition at line 26 of file SUMA_3dVol2Surf.h.

char* opts_t::map_str
 

Definition at line 48 of file SUMA_3dSurf2Vol.h.

Referenced by disp_opts_t(), init_options(), set_smap_opts(), and validate_options().

int opts_t::nice
 

Definition at line 102 of file Imon.h.

Referenced by idisp_hf_opts_t(), idisp_opts_t(), init_extras(), and init_options().

int opts_t::no_head
 

Definition at line 29 of file SUMA_3dVol2Surf.h.

Referenced by disp_opts_t(), init_options(), and set_smap_opts().

char* opts_t::nodes_1D_file
 

Definition at line 89 of file SUMA_SurfMeasures.h.

Referenced by disp_opts_t(), init_options(), init_opts_t(), read_nodes_file(), and validate_options().

int opts_t::norm_dir
 

Definition at line 35 of file SUMA_3dVol2Surf.h.

Referenced by disp_opts_t(), init_options(), set_smap_opts(), and validate_options().

float opts_t::norm_len
 

Definition at line 34 of file SUMA_3dVol2Surf.h.

Referenced by disp_opts_t(), init_options(), set_smap_opts(), and validate_options().

int opts_t::noscale
 

Definition at line 56 of file SUMA_3dSurf2Vol.h.

Referenced by disp_opts_t(), init_options(), and set_smap_opts().

int opts_t::nt
 

Definition at line 101 of file Imon.h.

Referenced by ART_send_control_info(), idisp_hf_opts_t(), idisp_opts_t(), init_options(), and set_volume_stats().

v2s_oob_t opts_t::oob
 

Definition at line 44 of file SUMA_3dVol2Surf.h.

Referenced by init_options(), and set_smap_opts().

v2s_oob_t opts_t::oom
 

Definition at line 45 of file SUMA_3dVol2Surf.h.

Referenced by init_options(), and set_smap_opts().

char* opts_t::oset_file
 

Definition at line 40 of file SUMA_3dSurf2Vol.h.

Referenced by disp_opts_t(), init_options(), validate_datasets(), and write_output().

char* opts_t::out_1D_file
 

Definition at line 87 of file SUMA_SurfMeasures.h.

Referenced by disp_opts_t(), init_options(), init_opts_t(), and validate_options().

char* opts_t::outfile_1D
 

Definition at line 21 of file SUMA_3dVol2Surf.h.

Referenced by check_outfile(), disp_opts_t(), init_options(), set_smap_opts(), and validate_options().

char* opts_t::outfile_niml
 

Definition at line 22 of file SUMA_3dVol2Surf.h.

Referenced by check_outfile(), disp_opts_t(), init_options(), set_smap_opts(), and validate_options().

int opts_t::pause
 

Definition at line 103 of file Imon.h.

Referenced by find_more_volumes(), idisp_opts_t(), and init_options().

int opts_t::quit
 

Definition at line 106 of file Imon.h.

Referenced by find_more_volumes(), idisp_hf_opts_t(), idisp_opts_t(), and init_options().

int opts_t::rev_bo
 

Definition at line 113 of file Imon.h.

Referenced by check_im_byte_order(), idisp_hf_opts_t(), idisp_opts_t(), and init_options().

int opts_t::rt
 

Definition at line 111 of file Imon.h.

Referenced by idisp_hf_opts_t(), idisp_opts_t(), and init_options().

string_list opts_t::rt_list
 

Definition at line 116 of file Imon.h.

Referenced by ART_send_control_info(), idisp_hf_opts_t(), idisp_opts_t(), and init_options().

char* opts_t::sdata_file_1D
 

Definition at line 44 of file SUMA_3dSurf2Vol.h.

Referenced by disp_opts_t(), fill_node_list(), init_options(), sdata_from_1D(), and validate_surface().

char* opts_t::sdata_file_niml
 

Definition at line 45 of file SUMA_3dSurf2Vol.h.

Referenced by disp_opts_t(), init_options(), and validate_surface().

int opts_t::skip_cols
 

Definition at line 30 of file SUMA_3dVol2Surf.h.

Referenced by init_options(), and set_smap_opts().

char* opts_t::snames[V2S_MAX_SURFS]
 

Definition at line 27 of file SUMA_3dVol2Surf.h.

char* opts_t::snames[S2V_MAX_SURFS]
 

Definition at line 51 of file SUMA_3dSurf2Vol.h.

Referenced by disp_opts_t(), fill_SUMA_structs(), init_options(), read_surf_files(), set_smap_opts(), validate_options(), and validate_surface().

char* opts_t::sp
 

Definition at line 97 of file Imon.h.

Referenced by ART_send_control_info(), create_gert_dicom(), create_gert_reco(), create_gert_script(), idisp_hf_opts_t(), idisp_opts_t(), and init_options().

char* opts_t::spec_file
 

Definition at line 85 of file SUMA_SurfMeasures.h.

char* opts_t::spec_file
 

Definition at line 23 of file SUMA_3dVol2Surf.h.

char* opts_t::spec_file
 

Definition at line 41 of file SUMA_3dSurf2Vol.h.

Referenced by disp_opts_t(), fill_SUMA_structs(), init_options(), init_opts_t(), read_surf_files(), spec2SUMA(), validate_options(), and validate_surface().

char* opts_t::start_dir
 

Definition at line 95 of file Imon.h.

Referenced by find_fl_file_index(), idisp_hf_opts_t(), idisp_opts_t(), init_extras(), init_options(), and read_ge_files().

char* opts_t::start_file
 

Definition at line 94 of file Imon.h.

Referenced by find_fl_file_index(), idisp_hf_opts_t(), idisp_opts_t(), init_extras(), init_options(), and read_ge_files().

char* opts_t::surf_names[ST_MAX_SURFS]
 

Definition at line 90 of file SUMA_SurfMeasures.h.

Referenced by disp_opts_t(), init_options(), init_opts_t(), spec2SUMA(), and validate_options().

char* opts_t::surf_xyz_1D_file
 

Definition at line 43 of file SUMA_3dSurf2Vol.h.

Referenced by disp_opts_t(), init_options(), read_surf_files(), read_sxyz_1D(), sxyz_1D_to_nlist(), and validate_surface().

char* opts_t::sv_file
 

Definition at line 86 of file SUMA_SurfMeasures.h.

char* opts_t::sv_file
 

Definition at line 24 of file SUMA_3dVol2Surf.h.

char* opts_t::sv_file
 

Definition at line 42 of file SUMA_3dSurf2Vol.h.

Referenced by disp_opts_t(), fill_SUMA_structs(), init_options(), init_opts_t(), read_surf_files(), spec2SUMA(), validate_options(), and validate_surface().

int opts_t::swap
 

Definition at line 112 of file Imon.h.

Referenced by idisp_hf_opts_t(), idisp_opts_t(), and init_options().

int opts_t::sxyz_ori_gpar
 

Definition at line 52 of file SUMA_3dSurf2Vol.h.

Referenced by disp_opts_t(), init_options(), and set_smap_opts().

int opts_t::use_dicom
 

Definition at line 107 of file Imon.h.

Referenced by check_one_volume(), create_gert_script(), idisp_opts_t(), init_options(), read_ge_files(), scan_ge_files(), and volume_search().

int opts_t::use_norms
 

Definition at line 33 of file SUMA_3dVol2Surf.h.

Referenced by disp_opts_t(), init_options(), set_smap_opts(), and validate_options().

The documentation for this struct was generated from the following files:
 
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