AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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Daniel Glen
December 17, 2013 12:50PM
Given that you're pretty new to this, I would suggest you proceed in stages.

1. Get data in DICOM format at scanner at end of scan. Transfer data to AFNI.
2. Get data in DICOM format at scanner at each TR. Transfer data to AFNI.
3. Analyze on remote or same computer and send something back to scanner or stimulus presentation computer - atlas-based ROIs, locator task ROIs, SVM, motion parameter based results, ...

There can be different challenges with different scanners, network configurations, information to be processed and stimulus presentation. See the class material, the rtfeedme script example, the Dimon help, the to3d help also, and some previous messageboard postings too. There is a readme about configuring realtime display in AFNI. There was also an old realtime_howto document, but I'm not sure how up to date this is.

http://afni.nimh.nih.gov/pub/dist/edu/latest/afni21_realtime/

http://afni.nimh.nih.gov/pub/dist/doc/program_help/README.realtime.html

http://afni.nimh.nih.gov/pub/dist/doc/OLD/realtime_howto.html

http://afni.nimh.nih.gov/afni/community/board/read.php?1,61622,61637,quote=1



Edited 2 time(s). Last edit at 12/17/2013 05:27PM by Daniel Glen.
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Subject Author Posted

Setting up a rtfmri neurofeedback system

tsakinis December 15, 2013 03:24AM

Re: Setting up a rtfmri neurofeedback system

Daniel Glen December 17, 2013 12:50PM

Re: Setting up a rtfmri neurofeedback system

tsakinis February 24, 2014 08:32AM

Re: Setting up a rtfmri neurofeedback system

rick reynolds February 24, 2014 09:33AM