AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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Colm Connolly
September 13, 2012 02:55PM
Hi everybody,

Does 3dMean not handle the filelist: style of command line argument?

3dMean -prefix /Users/colmconn/mriAnalyses/MDD/data/Group.results/sgAccAverage2 filelist:/Users/colmconn/mriAnalyses/MDD/data/Group.results/sgACC.bucketFileList.txt

produces a bucket file with 60 subbriks (the bucket list file contains 60 lines) whereas

3dMean -prefix ~/mriAnalyses/MDD/data/Group.results/sgAccAverage $( cat ~/mriAnalyses/MDD/data/Group.results/sgACC.bucketFileList.txt )

produces a bucket with one subbrik as expected.

Also, does the filelist: not like file paths with spaces in the name?

I tried having paths like

/Volumes/PROMISE PEGASUS/yangdata/restingstate/data/108_A/functional/108_A.restingstate.preprocessed.MNI+tlrc.HEAD[133]

and it failed to read the file because of the space in the path. I tried with and without AFNI_PATH_SPACES_OK=YES with no difference, failure in both cases.

Version AFNI_2011_12_21_1014
[[Precompiled binary macosx_10.7_Intel_64: Sep 12 2012]]

Thanks,

Colm.
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Subject Author Posted

odd behavior from 3dMean with filelist: style argument

Colm Connolly September 13, 2012 02:55PM

Re: odd behavior from 3dMean with filelist: style argument

rick reynolds September 13, 2012 03:33PM