Hi,
I installed AFNI 2.52c linux_glibc22 binary version on a workstation and tried SUMA, but can't start suma. The system configuration is: 1.8G CPU, 1G Memory, nVidia Quadro4 900XGL Graphic Card; operating system is Redhat 7.3.
I downloaded SUMA source code and compiled with Makefile.linux_glibc22. Then I downloaded the FreeSurfer demo data sets and type these commands as in SUMA installation guide:
>FS> cd SUMA_demo/SurfData/SUMA
>FS> suma -spec DemoSubj_lh.spec
Expecting to read 4 surfaces.
vvvvvvvvvvvvvvvvvvvvvvvvvvvvSurface #0 (directly mappable), loading ...
SUMA_FreeSurfer_Read: File ./lh.smoothwm.asc exists and will be read.
SUMA_Make_Edge_List: Min/Max number of edge hosting triangles: [2/2]
vvvvvvvvvvvvvvvvvvvvvvvvvvvvSurface #1 (mappable via MappingRef), loading ...
SUMA_FreeSurfer_Read: File ./lh.pial.asc exists and will be read.
vvvvvvvvvvvvvvvvvvvvvvvvvvvvSurface #2 (mappable via MappingRef), loading ...
SUMA_FreeSurfer_Read: File ./lh.inflated.asc exists and will be read.
vvvvvvvvvvvvvvvvvvvvvvvvvvvvSurface #3 (mappable via MappingRef), loading ...
SUMA_FreeSurfer_Read: File ./lh.sphere.asc exists and will be read.
The information stopped here.
After about 20 minutes, I checked the running processes using "top" command through SSH connection from another computer. Here's the result:
$ top
3:30pm up 1:09, 5 users, load average: 2.08, 2.08, 1.69
67 processes: 62 sleeping, 5 running, 0 zombie, 0 stopped
CPU states: 96.4% user, 3.5% system, 0.0% nice, 0.0% idle
Mem: 1030992K av, 877008K used, 153984K free, 0K shrd, 36036K buff
Swap: 2096472K av, 0K used, 2096472K free 604780K cached
PID USER PRI NI SIZE RSS SHARE STAT %CPU %MEM TIME COMMAND
7436 lydia 25 0 272M 143M 3416 R 49.5 14.2 11:55 suma
1265 root 25 0 273M 17M 4680 R 47.9 1.7 11:43 X
1412 lydia 15 0 636 632 512 S 2.3 0.0 0:46 autorun
7535 lydia 15 0 1036 1036 836 R 0.1 0.1 0:00 top
...
Seems suma is still running, but nothing in the suma's window except the menu with "File View Tools ..." options.
I also check make_suma_log, and most looks fine except in netcdf-3.5.0/src, when running ./configuration, something about fortran can't be found.
Here's the log of this part:
...
creating cache ./config.cache
checking for top-level source-directory
/MRITools2/AFNI2.52c/src/netcdf-3.5.0/src
checking for m4 preprocessor
checking for m4... m4
checking m4 flags... -B10000
checking C compiler "/usr/bin/gcc"... works
checking how to make dependencies... false
configure: warning: Empty CXX variable
configure: warning: The C++ interface will not be built
checking how to run the C preprocessor... /usr/bin/gcc -E
configure: warning: Fortran-77 compiler is explicitly null
configure: warning: The Fortran-77 interface will not be built
checking for Fortran .F compiler...
checking for Fortran preprocessor... /usr/bin/gcc -E
checking user-defined Fortran-90 compiler ""... failed to compile test program
configure: warning: The Fortran-90 interface will not be built
checking for nm utility
checking for nm... nm
checking nm flags...
checking for math library
checking for tanh in -lc... no
checking for tanh in -lm... yes
checking for ar utility
checking for ar... ar
checking ar flags... cru
checking for nm utility
checking for nm... (cached) nm
checking nm flags...
checking for ranlib... ranlib
checking for stdlib.h... yes
checking for sys/types.h... yes
checking for strerror... yes
checking for working ftruncate()... yes
checking for working alloca.h... yes
checking for alloca... yes
checking for st_blksize in struct stat... yes
checking for IEEE floating point format... yes
checking for ANSI C header files... yes
checking for size_t... yes
checking for off_t... yes
checking for ssize_t... yes
checking for ptrdiff_t... yes
checking for uchar... no
checking whether char is unsigned... no
checking whether byte ordering is bigendian... no
checking size of short... 2
checking size of int... 4
checking size of long... 4
checking size of float... 4
checking size of double... 8
checking size of off_t... 4
checking size of size_t... 4
checking for manual-page index command...
checking binary distribution directory... /home/ftp/pub/binary/dummy_system
updating cache ./config.cache
creating ./config.status
creating macros.make
udcreating fortran/nfconfig.inc
fortran/nfconfig.inc is unchanged
creating libsrc/ncconfig.h
libsrc/ncconfig.h is unchanged
make[1]: Entering directory `/MRITools2/AFNI2.52c/src/netcdf-3.5.0/src'
make[2]: Entering directory `/MRITools2/AFNI2.52c/src/netcdf-3.5.0/src'
...
Any suggestion? Thanks.
Lydia
