Hmm, well, I've changed: AFNI_SLAVE_FUNCTIME, AFNI_SLAVE_THRTIME and AFNI_SLAVE_BUCKETS_TOO all to YES in the ~/.afnirc file (and I had to add a line for the third one to be included; I've also tried using those in the commandline with -D[option], as well), but nothing appears to change when that happens-- when I plot an overlay, the default OLay is #0 and Thr is #1, and even if I change the OLay sub-brick, the Thr does not change automatically like I would want... Have I misunderstood something?
Thanks,
pt