Hi Nicole,
This is likely not a problem with afni_proc.py at all.
I expect that the script was corrupted somehow, and it is no
longer a Unix text file. Try running dos2unix on it.
In any case, it would be nice to see the actual text output,
from the beginning down to the first errors. If you are running
it the way it suggests, then you have an output.* file with all of
the text output.
Would you please send me email with the proc script, as well
as the output file saved from executing it, so I can see the errors?
Do you have my email address?
- rick