AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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chun-chia
April 08, 2009 07:04AM
HI Rick:

In our student's practice of running align_epi_anat.py, some of the students encounter the following message (while others ran fine):

align_epi_anat.py -anat yhh_expvol+orig. -epi R1+orig. -epi_base 0
#++ align_epi_anat version: 1.17
#Script is running:
3dAttribute DELTA /home/jeffery/桌面/yhh_031409/R1+orig
#++ Spacing for EPI to tlrc alignment is 3.000000 mm
#Script is running:
3dAttribute DELTA /home/jeffery/桌面/yhh_031409/yhh_expvol+orig
#++ Spacing for anat to EPI deobliquing is 0.902778 mm
#++ Removing all the temporary files
#Script is running:
rm -f __tt_R1*
rm: No match.
#Script is running:
rm -f __tt_yhh_expvol*
rm: No match.
#Script is running:
3dcopy /home/jeffery/桌面/yhh_031409/yhh_expvol+orig __tt_yhh_expvol
++ 3dcopy: AFNI version=AFNI_2008_07_18_1710 (Feb 12 2009) [32-bit]
** FATAL ERROR: Illegal old dataset name! - EXIT
** ERROR: Could not copy anat (0)
** ERROR - script failed

do you know what went wrong? Why did some students ran it fine while others cannot run it?
thx, chun-chia

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Subject Author Posted

questions on align_epi_anat.py

chun-chia April 08, 2009 07:04AM

Re: questions on align_epi_anat.py

Bob Cox April 08, 2009 08:29AM

Re: questions on align_epi_anat.py

Bob Cox April 08, 2009 09:00AM

Re: questions on align_epi_anat.py

chun-chia April 08, 2009 09:33AM

Re: questions on align_epi_anat.py

chun-chia April 08, 2009 06:01PM

Re: visual alignment checking

bob cox April 08, 2009 06:27PM