AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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bob cox
April 08, 2009 06:27PM
Please tell your students that at all times, no matter what program they use, they should spend a few minutes to make sure the alignment program did a good job. Our program is pretty robust, but it still can give bad results on occasion, so it is very important to check to make sure that the image volumes are aligned the way you expect them to be.

The -AddEdge option to align_epi_anat.py is designed to create edge-enhanced datasets that can be very helpful in this visual checking step. See our paper

[afni.nimh.nih.gov]
[afni.nimh.nih.gov]

for more information!

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Subject Author Posted

questions on align_epi_anat.py

chun-chia April 08, 2009 07:04AM

Re: questions on align_epi_anat.py

Bob Cox April 08, 2009 08:29AM

Re: questions on align_epi_anat.py

Bob Cox April 08, 2009 09:00AM

Re: questions on align_epi_anat.py

chun-chia April 08, 2009 09:33AM

Re: questions on align_epi_anat.py

chun-chia April 08, 2009 06:01PM

Re: visual alignment checking

bob cox April 08, 2009 06:27PM