Hi rick,
I'm totally new in afni. I have a similar error about the "permission denied".
When running the preprocessing script, everything runs smoothly until:
./@ss_review_basic
./@ss_review_basic: Permission denied
Then running tcsh @ss_review_basic
gives:
subject ID : cl
TRs removed (per run) : 0
num stim classes provided : 12
final anatomy dset : anat_final.cl+tlrc.HEAD
final stats dset : stats.cl+tlrc.HEAD
final voxel resolution : 3.000000 3.000000 3.000000
motion limit : 0.3
num TRs above mot limit : 11
average motion (per TR) : 0.0604953
max motion displacement : 3.19793
outlier limit : 0.1
average outlier frac (TR) : 0.00628819
num TRs above out limit : 23
num runs found : 8
num TRs per run : 170 170 170 170 170 170 170 170
TRs total : 1360
degrees of freedom used : 230
degrees of freedom left : 1130
num regs of interest : 192
num TRs per stim : 14 14 14 14 14 14 14 14 14 6 14 14 6 14 14 14 14 14 14 14 14 14 14 14 14 14 14 14 14 14 14 14 14 14 14 14 14 14 14 14 14 14 14 14 14 14 14 14 14 14 14 14 14 14 14 6 14 14 14 14 13 14 14 6 14 6 14 14 14 14 14 14 14 14 14 14 14 14 14 14 14 14 14 14 6 14 14 14 14 14 14 14 13 14 14 14 14 14 14 14 14 14 14 14 14 14 14 14 14 14 14 14 14 14 14 14 14 14 6 14 14 14 14 14 14 14 14 14 14 14 13 14 14 14 14 13 14 14 14 14 14 14 14 14 14 14 14 14 14 14 14 14 14 14 13 14 14 6 14 14 14 14 13 14 14 14 14 14 14 14 14 14 14 14 14 13 14 14 14 14 14 14 13 14 14 14 14 14 14 14 14 14
ave mot per sresp : 0.049754 0.046569 0.044845 0.082998 0.059557 0.050515 0.055109 0.061102 0.061298 0.065610 0.062176 0.079549 0.063803 0.040637 0.080826 0.056717 0.042695 0.056994 0.051963 0.059303 0.042055 0.048362 0.041535 0.054816 0.048977 0.054542 0.049595 0.049400 0.046039 0.089451 0.049038 0.160896 0.048545 0.051107 0.058961 0.072722 0.049544 0.052277 0.052512 0.049582 0.146770 0.057037 0.060320 0.065764 0.063399 0.062779 0.046183 0.074308 0.050808 0.047347 0.047225 0.052453 0.048620 0.048598 0.049140 0.065594 0.041526 0.060825 0.056635 0.065749 0.105498 0.052369 0.153502 0.051474 0.062655 0.051226 0.048882 0.047062 0.059697 0.057504 0.050415 0.103944 0.046650 0.051499 0.061409 0.049295 0.072351 0.107077 0.073182 0.059581 0.044654 0.041675 0.056747 0.051991 0.062605 0.092354 0.041068 0.065016 0.046994 0.044322 0.043773 0.052231 0.064680 0.130568 0.136401 0.177856 0.045099 0.066198 0.074524 0.055911 0.036859 0.047962 0.066714 0.097773 0.038927 0.079309 0.056390 0.052234 0.083104 0.048807 0.078329 0.057988 0.042471 0.042764 0.047964 0.044729 0.050483 0.056770 0.094465 0.068755 0.065612 0.059504 0.046927 0.050682 0.048577 0.041346 0.048205 0.045900 0.054419 0.058754 0.040527 0.059105 0.052783 0.055980 0.048988 0.067387 0.046264 0.150880 0.044720 0.043746 0.101190 0.104776 0.063277 0.064351 0.051607 0.067616 0.058231 0.055516 0.060469 0.070095 0.054973 0.053492 0.052769 0.052124 0.053988 0.045691 0.058984 0.167187 0.049739 0.052668 0.052486 0.051965 0.059250 0.039589 0.055986 0.058098 0.054885 0.052185 0.070186 0.049582 0.036732 0.043909 0.053423 0.054731 0.048118 0.056171 0.052361 0.046359 0.056834 0.050711 0.072551 0.050101 0.076801 0.046901 0.047991 0.078321 0.078141 0.050181 0.047078 0.055730 0.060203 0.056482
TSNR average : 221.168
global correlation (GCOR) : 0.06624
anat/EPI mask Dice coef : 0.921968
maximum F-stat (masked) : 19.5891
blur estimates (ACF) : 0.66514 3.34687 10.5599
blur estimates (FWHM) : 0 0 0
My experiment is slow event-related design. There are 8 runs and 12 types of stimulus conditions in a scanning session, each run consisted of 24 trials (1 trial=14s) and 1TR=2s. As shown above, some num TRs per stim: 6 or 13, was the timing files wrong? I have checked the time files. What other causes may there be?
Thanks a lot in advance.
-jiaxin