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April 23, 2013 03:27PM
Let me preface this: I am new to afni, horrible with computing in general, and I am a graduate student.

I am trying to process a bunch of data using afni_proc.py. When I run the tcsh output program it creates, I get the following error message:

#Script is running (command trimmed):
3dSkullStrip -orig_vol -input ./__tt_240_anat+orig -prefix ./__tt_240_anat_ns
3dSkullStrip: error while loading shared libraries: libgsl.so.0: cannot open shared object file: No such file or directory
** ERROR: Could not strip skull

** ERROR - script failed
@auto_tlrc -base TT_N27+tlrc -input 240_anat_strip+orig -no_ss -suffix NONE
Suffix not used.


What is wrong?? Thanks for the help!
Subject Author Posted

trouble with afniproc and SkullStrip

Sarah April 23, 2013 03:27PM

Re: trouble with afniproc and SkullStrip

Peter Molfese April 23, 2013 03:34PM

Re: trouble with afniproc and SkullStrip

Sarah April 23, 2013 03:36PM

Re: trouble with afniproc and SkullStrip

Peter Molfese April 23, 2013 03:40PM

Re: trouble with afniproc and SkullStrip

Sarah April 23, 2013 03:41PM

Re: trouble with afniproc and SkullStrip

Peter Molfese April 23, 2013 03:52PM

Re: trouble with afniproc and SkullStrip

Sarah April 24, 2013 11:09AM

Re: trouble with afniproc and SkullStrip

Peter Molfese April 24, 2013 11:32AM

Re: trouble with afniproc and SkullStrip

Sarah April 24, 2013 11:38AM

Re: trouble with afniproc and SkullStrip

Peter Molfese April 24, 2013 11:52AM

Re: trouble with afniproc and SkullStrip

Sarah April 24, 2013 11:55AM

Re: trouble with afniproc and SkullStrip

Sarah April 24, 2013 12:01PM

Re: trouble with afniproc and SkullStrip

rick reynolds April 24, 2013 12:56PM

Re: trouble with afniproc and SkullStrip

Sarah April 24, 2013 01:06PM

Re: trouble with afniproc and SkullStrip

agrant May 23, 2013 12:12PM

Re: trouble with afniproc and SkullStrip

Danny August 30, 2013 03:22PM

Re: trouble with afniproc and SkullStrip

rick reynolds August 30, 2013 04:03PM

Re: trouble with afniproc and SkullStrip

Danny August 30, 2013 04:14PM

Re: trouble with afniproc and SkullStrip

jgowin December 17, 2013 11:40AM

Re: trouble with afniproc and SkullStrip

Daniel Glen December 17, 2013 12:10PM

Re: trouble with afniproc and SkullStrip

ziad December 17, 2013 02:48PM

Re: trouble with afniproc and SkullStrip

jgowin December 18, 2013 11:06AM

Re: trouble with afniproc and SkullStrip

shanaadise November 30, 2015 01:29PM

Re: trouble with afniproc and SkullStrip

shanaadise November 30, 2015 02:26PM

Re: trouble with afniproc and SkullStrip

rick reynolds November 30, 2015 09:10PM