History of AFNI updates  

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April 24, 2013 11:09AM
rebooting the computer did solve this problem, and I was able to run through afni_proc.py for one subject. Now, I am seeing this error, and I don't know how to deal with it:

#++ removing skull or area outside brain
#Script is running (command trimmed):
3dSkullStrip -orig_vol -input ./__tt_pb01.302a.r04.tshift_ts_rs+orig -prefix ./__tt_pb01.302a.r04.tshift_ts_rs_ns
**ERROR: normalization fails!?
** ERROR: Could not strip skull

** ERROR - script failed
@auto_tlrc -base TT_N27+tlrc -input 302a_anat_strip+orig -no_ss -suffix NONE

Thank you again!
Subject Author Posted

trouble with afniproc and SkullStrip

Sarah April 23, 2013 03:27PM

Re: trouble with afniproc and SkullStrip

Peter Molfese April 23, 2013 03:34PM

Re: trouble with afniproc and SkullStrip

Sarah April 23, 2013 03:36PM

Re: trouble with afniproc and SkullStrip

Peter Molfese April 23, 2013 03:40PM

Re: trouble with afniproc and SkullStrip

Sarah April 23, 2013 03:41PM

Re: trouble with afniproc and SkullStrip

Peter Molfese April 23, 2013 03:52PM

Re: trouble with afniproc and SkullStrip

Sarah April 24, 2013 11:09AM

Re: trouble with afniproc and SkullStrip

Peter Molfese April 24, 2013 11:32AM

Re: trouble with afniproc and SkullStrip

Sarah April 24, 2013 11:38AM

Re: trouble with afniproc and SkullStrip

Peter Molfese April 24, 2013 11:52AM

Re: trouble with afniproc and SkullStrip

Sarah April 24, 2013 11:55AM

Re: trouble with afniproc and SkullStrip

Sarah April 24, 2013 12:01PM

Re: trouble with afniproc and SkullStrip

rick reynolds April 24, 2013 12:56PM

Re: trouble with afniproc and SkullStrip

Sarah April 24, 2013 01:06PM

Re: trouble with afniproc and SkullStrip

agrant May 23, 2013 12:12PM

Re: trouble with afniproc and SkullStrip

Danny August 30, 2013 03:22PM

Re: trouble with afniproc and SkullStrip

rick reynolds August 30, 2013 04:03PM

Re: trouble with afniproc and SkullStrip

Danny August 30, 2013 04:14PM

Re: trouble with afniproc and SkullStrip

jgowin December 17, 2013 11:40AM

Re: trouble with afniproc and SkullStrip

Daniel Glen December 17, 2013 12:10PM

Re: trouble with afniproc and SkullStrip

ziad December 17, 2013 02:48PM

Re: trouble with afniproc and SkullStrip

jgowin December 18, 2013 11:06AM

Re: trouble with afniproc and SkullStrip

shanaadise November 30, 2015 01:29PM

Re: trouble with afniproc and SkullStrip

shanaadise November 30, 2015 02:26PM

Re: trouble with afniproc and SkullStrip

rick reynolds November 30, 2015 09:10PM