History of AFNI updates  

|
April 24, 2013 11:38AM
when I run that command in the results folder, here is the output:

pb01.302a.r01.tshift 3.796875 -3.796875 3.800000 64 64 36 163
pb01.302a.r02.tshift 3.796875 -3.796875 3.800000 64 64 36 163
pb01.302a.r03.tshift 3.796875 -3.796875 3.800000 64 64 36 163
pb01.302a.r04.tshift 3.796875 -3.796875 3.800000 64 64 36 163


and here is the afni_proc.py command I am using:

$ afni_proc.py -subj_id 302a -dsets 302a_run1+orig 302a_run2+orig 302a_run3+orig 302a_run4+orig -blocks tshift volreg blur mask scale regress -copy_anat 302a_anat+orig -do_block align tlrc -volreg_align_to last -volreg_align_e2a -volreg_tlrc_warp -blur_in_automask -regress_stim_times stimes.NT1.1D stimes.NT2.1D stimes.NT3.1D stimes.ND1.1D stimes.ND2.1D stimes.ND3.1D stimes.ST1.1D stimes.ST2.1D stimes.ST3.1D stimes.SD1.1D stimes.SD2.1D stimes.SD3.1D stimes.SAM.1D -test_stim_files no -regress_stim_labels NT1 NT2 NT3 ND1 ND2 ND3 ST1 ST2 ST3 SD1 SD2 SD3 SAM -regress_basis 'TENT(0,16,9)' -regress_opts_3dD -num_glt 16 -GOFORIT 13 -allzero_ok
-gltsym 'SYM: +NT1 +NT2 +NT3 -ND1 -ND2 -ND3'
-glt_label 1 NTvND
-gltsym 'SYM: +ST1 +ST2 +ST3 -SD1 -SD2 -SD3'
-glt_label 2 STvSD
-gltsym 'SYM: +NT1 +NT2 +NT3 -ST1 -ST2 -ST3'
-glt_label 3 NTvST
-gltsym 'SYM: +ND1 +ND2 +ND3 -SD1 -SD2 -SD3'
-glt_label 4 NDvSD
-gltsym 'SYM: +NT1 -NT2 -NT3'
-glt_label 5 NTrep
-gltsym 'SYM: +ND1 -ND2 -ND3'
-glt_label 6 NDrep
-gltsym 'SYM: +ST1 -ST2 -ST3'
-glt_label 7 STrep
-gltsym 'SYM: +SD1 -SD2 -SD3'
-glt_label 8 SDrep
-gltsym 'SYM: +NT1 +ST1 -NT2 -NT3 -ST2 -ST3'
-glt_label 9 Trep
-gltsym 'SYM: +ND1 +SD1 -ND2 -ND3 -SD2 -SD3'
-glt_label 10 Drep
-gltsym 'SYM: +ST1 +SD1 -ST2 -ST3 -SD2 -SD3'
-glt_label 11 Srep
-gltsym 'SYM: +NT1 +ND1 -NT2 -NT3 -ND2 -ND3'
-glt_label 12 Nrep
-gltsym 'SYM: +NT1 +ND1 +ST1 +SD1 -NT2 -NT3 -ND2 -ND3 -ST2 -ST3 -SD2 -SD3'
-glt_label 13 Rep
-gltsym 'SYM: +NT1 +NT2 +NT3 +ST1 +ST2 +ST3 -ND1 -ND2 -ND3 -SD1 -SD2 -SD3'
-glt_label 14 TvD
-gltsym 'SYM: +ST1 +ST2 +ST3 +SD1 +SD2 +SD3 -NT1 -NT2 -NT3 -ND1 -ND2 -ND3'
-glt_label 15 SvN
-gltsym 'SYM: +SAM -NT1 -NT2 -NT3 -ND1 -ND2 -ND3 -ST1 -ST2 -ST3 -SD1 -SD2 -SD3'
-glt_label 16 SAMvAll
-regress_est_blur_epits -regress_est_blur_errts
Subject Author Posted

trouble with afniproc and SkullStrip

Sarah April 23, 2013 03:27PM

Re: trouble with afniproc and SkullStrip

Peter Molfese April 23, 2013 03:34PM

Re: trouble with afniproc and SkullStrip

Sarah April 23, 2013 03:36PM

Re: trouble with afniproc and SkullStrip

Peter Molfese April 23, 2013 03:40PM

Re: trouble with afniproc and SkullStrip

Sarah April 23, 2013 03:41PM

Re: trouble with afniproc and SkullStrip

Peter Molfese April 23, 2013 03:52PM

Re: trouble with afniproc and SkullStrip

Sarah April 24, 2013 11:09AM

Re: trouble with afniproc and SkullStrip

Peter Molfese April 24, 2013 11:32AM

Re: trouble with afniproc and SkullStrip

Sarah April 24, 2013 11:38AM

Re: trouble with afniproc and SkullStrip

Peter Molfese April 24, 2013 11:52AM

Re: trouble with afniproc and SkullStrip

Sarah April 24, 2013 11:55AM

Re: trouble with afniproc and SkullStrip

Sarah April 24, 2013 12:01PM

Re: trouble with afniproc and SkullStrip

rick reynolds April 24, 2013 12:56PM

Re: trouble with afniproc and SkullStrip

Sarah April 24, 2013 01:06PM

Re: trouble with afniproc and SkullStrip

agrant May 23, 2013 12:12PM

Re: trouble with afniproc and SkullStrip

Danny August 30, 2013 03:22PM

Re: trouble with afniproc and SkullStrip

rick reynolds August 30, 2013 04:03PM

Re: trouble with afniproc and SkullStrip

Danny August 30, 2013 04:14PM

Re: trouble with afniproc and SkullStrip

jgowin December 17, 2013 11:40AM

Re: trouble with afniproc and SkullStrip

Daniel Glen December 17, 2013 12:10PM

Re: trouble with afniproc and SkullStrip

ziad December 17, 2013 02:48PM

Re: trouble with afniproc and SkullStrip

jgowin December 18, 2013 11:06AM

Re: trouble with afniproc and SkullStrip

shanaadise November 30, 2015 01:29PM

Re: trouble with afniproc and SkullStrip

shanaadise November 30, 2015 02:26PM

Re: trouble with afniproc and SkullStrip

rick reynolds November 30, 2015 09:10PM