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April 24, 2013 11:52AM
In your afni_proc.py command, having both a "-blocks" and a "-do_block" is somewhat repetitive (and might break something). You should be able to cutout the "-blocks tshift volreg blur mask scale regress" and get the same result that you are aiming for. I wonder if having both specified is giving afni_proc.py a hard time.

Is this error happening on other subjects? Can you open each of the EPIs in AFNI?

Also, what is the output of "afni --version"?



Edited 1 time(s). Last edit at 04/24/2013 11:53AM by Peter Molfese.
Subject Author Posted

trouble with afniproc and SkullStrip

Sarah April 23, 2013 03:27PM

Re: trouble with afniproc and SkullStrip

Peter Molfese April 23, 2013 03:34PM

Re: trouble with afniproc and SkullStrip

Sarah April 23, 2013 03:36PM

Re: trouble with afniproc and SkullStrip

Peter Molfese April 23, 2013 03:40PM

Re: trouble with afniproc and SkullStrip

Sarah April 23, 2013 03:41PM

Re: trouble with afniproc and SkullStrip

Peter Molfese April 23, 2013 03:52PM

Re: trouble with afniproc and SkullStrip

Sarah April 24, 2013 11:09AM

Re: trouble with afniproc and SkullStrip

Peter Molfese April 24, 2013 11:32AM

Re: trouble with afniproc and SkullStrip

Sarah April 24, 2013 11:38AM

Re: trouble with afniproc and SkullStrip

Peter Molfese April 24, 2013 11:52AM

Re: trouble with afniproc and SkullStrip

Sarah April 24, 2013 11:55AM

Re: trouble with afniproc and SkullStrip

Sarah April 24, 2013 12:01PM

Re: trouble with afniproc and SkullStrip

rick reynolds April 24, 2013 12:56PM

Re: trouble with afniproc and SkullStrip

Sarah April 24, 2013 01:06PM

Re: trouble with afniproc and SkullStrip

agrant May 23, 2013 12:12PM

Re: trouble with afniproc and SkullStrip

Danny August 30, 2013 03:22PM

Re: trouble with afniproc and SkullStrip

rick reynolds August 30, 2013 04:03PM

Re: trouble with afniproc and SkullStrip

Danny August 30, 2013 04:14PM

Re: trouble with afniproc and SkullStrip

jgowin December 17, 2013 11:40AM

Re: trouble with afniproc and SkullStrip

Daniel Glen December 17, 2013 12:10PM

Re: trouble with afniproc and SkullStrip

ziad December 17, 2013 02:48PM

Re: trouble with afniproc and SkullStrip

jgowin December 18, 2013 11:06AM

Re: trouble with afniproc and SkullStrip

shanaadise November 30, 2015 01:29PM

Re: trouble with afniproc and SkullStrip

shanaadise November 30, 2015 02:26PM

Re: trouble with afniproc and SkullStrip

rick reynolds November 30, 2015 09:10PM