AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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Colm Connolly
April 30, 2013 04:20PM
Hi Thomas,

Using FAST to segment T1s is relatively straight forward and considerably faster than Freesurfer especially if you do not need all the other bells and whistles that Freesurfer gives you.

fast -t 1 -g -p -o segment ${subjectNumber}.anat_struc_brain.std.nii.gz
will segment your T1 into grey, white and csf.

AFNI also has 3dSeg which segments T1s. You might try that as well. I've not yet used it in my resting state analysis.

Bye,

Colm.
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Subject Author Posted

ANATICOR - txt files and FAST

Thomas April 29, 2013 03:15PM

Re: ANATICOR - txt files and FAST

rick reynolds April 29, 2013 08:52PM

Re: ANATICOR - txt files and FAST

Colm Connolly April 30, 2013 04:20PM