AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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November 20, 2013 03:14PM
Dear AFNI experts,

In the passed I used @AddEdge with +orig datasets, but we've now started to move to +tlrc.

It seems that @AddEdge does not support +tlrc (see below); and I found that the script has '+orig' postfixes all over the place. Is that correct? If so, are there any plans to add +tlrc support?

Of course I can copy/refit to +orig and then apply +tlrc later, but that's a bit of a hassleā€¦

cheers,
Nick

$ \@AddEdge anat_mni_ss+tlrc fs_SurfVol_al2exp+tlrc.HEAD
++ 3dcopy: AFNI version=AFNI_2011_12_21_1014 (Sep 30 2013) [64-bit]
++ 3dAutobox: AFNI version=AFNI_2011_12_21_1014 (Sep 30 2013) [64-bit]
++ Executing 3dcalc()
argv[0]=3dcalc argv[1]=-a argv[2]=tmp_avg+orig argv[3]=-b argv[4]=_ae.anat_mni_ss+tlrc argv[5]=-expr argv[6]=((a+b)/2.0) argv[7]=-session argv[8]=/var/folders/g0/rz0mb_cd45xfznypdy_5d8780000gn/T/ argv[9]=-prefix argv[10]=3dcalc_XYZ_YqRCUvABkhXsZPEL4XVIWA argv[11]=-verbose
++ 3dcalc: AFNI version=AFNI_2011_12_21_1014 (Sep 30 2013) [64-bit]
++ Authored by: A cast of thousands
** FATAL ERROR: can't open dataset tmp_avg+orig
** Program compile date = Sep 30 2013
** ERROR: 3dcalc() failed - no dataset created!
** FATAL ERROR: Can't open dataset '3dcalc( -a tmp_avg+orig -b _ae.anat_mni_ss+tlrc -expr ((a+b)/2.0) )'
** Program compile date = Sep 30 2013
++ 3dedge3: AFNI version=AFNI_2011_12_21_1014 (Sep 30 2013) [64-bit]
** ERROR: output dataset name 'anat_mni_ss_e3' conflicts with existing file
** ERROR: dataset NOT written to disk!
** FATAL ERROR: Can't open dataset 'anat_mni_ss_e3+orig'
** Program compile date = Sep 30 2013
eth: Subscript out of range.
Subject Author Posted

@AddEdge does not support +tlrc?

nick November 20, 2013 03:14PM