AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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July 18, 2013 06:09PM
> The average cost value is significantly different between groups. So this means I need to add
> -center DIFF to my 3dttest++ script correct? How does this change the interpretation?

There are usually two research goals with a situation yours:

1) examine and compare the two groups while controlling for the covariate;
2) examine the correlation between BOLD response and the covariate (and sometimes compare the correlation between the groups).

If 2) is your ONLY goal, the centering issue is irrelevant and you can center whatever you prefer. And your initial question can be clarified:

> Positive correlation for sub-brick[2] (the behavioral covariate effect)= a higher behavioral value is correlated with more volume in the individual.
> Negative correlation for sub-brick[2] (the behavioral covariate effect)= a lower behavioral value is correlated with less volume in the individual.

-- At sub-brick #2 'old-young_cost' datum type is float: -1.9144 to 2.6131

It basically shows that the old group has higher correlation between the young group. The word 'higher' does not say anything about the sign (positive or negative) of the correlation. However, they can be found in the following sub-bricks:

Correlation for the old group:

-- At sub-brick #6 'old_cost' datum type is float: -1.52621 to 1.71339
-- At sub-brick #7 'old_cost_Tstat' datum type is float: -4.8015 to 5.5645

Correlation for the young group:

-- At sub-brick #10 'young_cost' datum type is float: -2.08607 to 1.47662
-- At sub-brick #11 'young_cost_Tstat' datum type is float: -6.61598 to 6.92221


However, if 1) is of interest, things become very subtle and difficult when the average covariate value is significantly different across groups.

Gang
Subject Author Posted

Running 3dttest++ with covariates on VBM study

Anonymous User July 16, 2013 11:58AM

Re: Running 3dttest++ with covariates on VBM study

gang July 16, 2013 01:45PM

Re: Running 3dttest++ with covariates on VBM study

Anonymous User July 16, 2013 02:34PM

Re: Running 3dttest++ with covariates on VBM study

gang July 16, 2013 06:27PM

Re: Running 3dttest++ with covariates on VBM study

Anonymous User July 17, 2013 10:50AM

Re: Running 3dttest++ with covariates on VBM study

gang July 18, 2013 06:09PM