AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
August 05, 2013 04:41PM
I just ran 3dRegAna for the first time and the results were very strange. There was a lot of significant activation outside of the brain and the results were completely different than we expected from previous comparison tests of the groups we are examining. Here is the script used in the 3dRegAna:

3dRegAna \
-rows 30 \
-cols 4 \
-xydata 1 -13.67 47 -2.63 'LR_2runs_H_P_bucket+tlrc[26]' \
-xydata 1 -15.67 29 -2.23 'DD_2runs_H_P_bucket+tlrc[26]' \
-xydata 0 -10.67 38 1.67 'PN_2runs_H_P_bucket+tlrc[26]' \
-xydata 0 -11.67 44 0.37 'CK_2runs_H_P_bucket+tlrc[26]' \
-xydata 1 -12.67 26 -1.73 'EWA_2runs_H_P_bucket+tlrc[26]' \
-xydata 1 -16.67 36 0.67 'MG_2runs_H_P_bucket+tlrc[26]' \
-xydata 0 -11.67 31 -3.53 'JH_2runs_H_P_bucket+tlrc[26]' \
-xydata 0 -10.67 27 1.87 'JG_2runs_H_P_bucket+tlrc[26]' \
-xydata 0 -17.67 32 -4.43 'CW_2runs_H_P_bucket+tlrc[26]' \
-xydata 0 -12.67 46 -2.23 'DA_2runs_H_P_bucket+tlrc[26]' \
-xydata 1 -14.67 38 0.37 'PM_2runs_H_P_bucket+tlrc[26]' \
-xydata 1 -13.67 21 -6.63 'TP_2runs_H_P_bucket+tlrc[26]' \
-xydata 1 -11.67 26 -5.23 'LG_2runs_H_P_bucket+tlrc[26]' \
-xydata 1 -1.67 47 18.47 'MJ_2runs_H_P_bucket+tlrc[26]' \
-xydata 1 -4.67 33 -2.23 'FT_2runs_H_P_bucket+tlrc[26]' \
-xydata 1 17.33 37 3.27 'MD_2runs_H_P_bucket+tlrc[26]' \
-xydata 0 10.33 23 0.87 'KR_2runs_H_P_bucket+tlrc[26]' \
-xydata 1 10.33 29 0.37 'EW_2runs_H_P_bucket+tlrc[26]' \
-xydata 0 12.33 37 -2.73 'HD_2runs_H_P_bucket+tlrc[26]' \
-xydata 0 14.33 26 3.17 'FP_2runs_H_P_bucket+tlrc[26]' \
-xydata 0 10.33 62 0.37 'DR_2runs_H_P_bucket+tlrc[26]' \
-xydata 1 15.33 24 -2.63 'CG_2runs_H_P_bucket+tlrc[26]' \
-xydata 0 17.33 27 3.67 'JT_2runs_H_P_bucket+tlrc[26]' \
-xydata 1 10.33 56 2.97 'JV_2runs_H_P_bucket+tlrc[26]' \
-xydata 1 15.33 20 -3.63 'VT_2runs_H_P_bucket+tlrc[26]' \
-xydata 0 10.33 36 -0.73 'CD_2runs_H_P_bucket+tlrc[26]' \
-xydata 1 10.33 25 -0.93 'DO_2runs_H_P_bucket+tlrc[26]' \
-xydata 0 8.33 34 -1.43 'CMO_2runs_H_P_bucket+tlrc[26]' \
-xydata 1 9.33 36 0.17 'AMA_2runs_H_P_bucket+tlrc[26]' \
-xydata 1 8.33 27 4.77 'SKY_2runs_H_P_bucket+tlrc[26]' \
-diskspace \
-rmsmin 1.0 \
-fdisp 10 \
-model 3 : 0 1 2 4 \
-bucket 11 anxiety.results \
-brick 0 coef 0 'NO_Eff' \
-brick 1 tstat 0 'NO_Eff t' \
-brick 2 coef 1 'Gender' \
-brick 3 tstat 1 'Gender t' \
-brick 4 coef 2 'AgeMD' \
-brick 5 tstat 2 'Age MD t' \
-brick 6 coef 3 'STAI-t' \
-brick 7 tstat 3 'STAI-t t' \
-brick 8 coef 4 'BMI' \
-brick 9 tstat 4 'BMI t' \
-brick 10 fstat "F-statistic"

Does anyone see any issues with the commands used? Or has anyone had a similar problem?
Here is a link to the picture: [picasaweb.google.com]

Thanks!
Aaron
Subject Author Posted

Weird 3dRegAna Results

Aaron August 05, 2013 04:41PM

Re: Weird 3dRegAna Results

gang August 05, 2013 06:56PM