> For the contrasts from GLT I do not have the sub-bricks: hit13LibvsBase#1_Coef
> and hit13LibvsBase#1_Stat". (I only have those in the first part of the output that you indicated correctly).
Since I can't see your file GLTs4/hit13liberal.glt, my guess is that you only requested for the contrast of the average, not the marginal, effect. You would have to add a separate test for the RT marginal effect.
> the Liberal13hits#0_Coef and the hit13LibvsBase#0_Coef output are different
The first one came from the following line:
-stim_label 1 Liberal13hits \
while the second from
-glt 1 GLTs4/hit13liberal.glt -glt_label 1 hit13LibvsBase \
To know why they are different, you would poke inside GLTs4/hit13liberal.glt and find the reason.
Gang