AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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November 14, 2013 01:24AM
So why all the warnings? Any fMRI practitioner knows that for two scans to be aligned, you have to align them. And yet AFNI makes it seem like something's wrong with the data and extreme measures must be taken if two datasets don't start out aligned.

Also, align_epi_anat.py does not put the anatomical and EPI scans in the same orientation. If one starts out RPI and the other RAI, they'll be the same after align_epi_anat.py has run.
Subject Author Posted

Dealing with oblique datasets

dbliss November 13, 2013 11:50PM

Re: Dealing with oblique datasets

Peter Molfese November 14, 2013 12:12AM

Re: Dealing with oblique datasets

dbliss November 14, 2013 01:24AM

Re: Dealing with oblique datasets

Peter Molfese November 14, 2013 09:06AM

Re: Dealing with oblique datasets

Daniel Glen November 14, 2013 03:39PM

Re: Dealing with oblique datasets

dbliss November 15, 2013 01:27PM

Re: Dealing with oblique datasets

dbliss November 15, 2013 01:40PM

Re: Dealing with oblique datasets

Daniel Glen November 15, 2013 01:52PM

Re: Dealing with oblique datasets

dbliss November 15, 2013 02:01PM

Re: Dealing with oblique datasets

Daniel Glen November 15, 2013 02:44PM

Re: Dealing with oblique datasets

dbliss November 15, 2013 03:10PM

Re: Dealing with oblique datasets

jbteves September 16, 2021 04:35PM

Re: Dealing with oblique datasets

Daniel Glen September 17, 2021 03:03PM