Hi afni experts,
I am running into an error in 3dQwarp when adding the -allineate options.
the error is:
++ 3dQwarp: replacing source dataset with DBS.018.anat.uni.strip.mni.2in1_Allin.nii
** FATAL ERROR: Can't open replacement source??
This is the script that I am using:
3dQwarp -prefix ${subj}.anat.uni.strip.mni.2in1 \
-duplo -useweight -blur 0 3 -base ${MNI_1mm} -allineate \
-allineate_opts '-twopass -cost lpa -autoweight -fineblur 3 -cmass -source_automask' \
-source ${subj}.anat.uni.strip+orig
Before the error, 3dQwarp generates these files:
XYZ_fnlY09s-W3zaqI-QnCQxrg.aff12.1D
XYZ_fnlY09s-W3zaqI-QnCQxrg.nii.gz
afni version: Program compile date = Oct 30 2013
thanks, Justin