AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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November 22, 2013 11:55AM
Hi afni experts,
I am running into an error in 3dQwarp when adding the -allineate options.

the error is:
++ 3dQwarp: replacing source dataset with DBS.018.anat.uni.strip.mni.2in1_Allin.nii
** FATAL ERROR: Can't open replacement source??

This is the script that I am using:
3dQwarp -prefix ${subj}.anat.uni.strip.mni.2in1 \
-duplo -useweight -blur 0 3 -base ${MNI_1mm} -allineate \
-allineate_opts '-twopass -cost lpa -autoweight -fineblur 3 -cmass -source_automask' \
-source ${subj}.anat.uni.strip+orig

Before the error, 3dQwarp generates these files:
XYZ_fnlY09s-W3zaqI-QnCQxrg.aff12.1D
XYZ_fnlY09s-W3zaqI-QnCQxrg.nii.gz

afni version: Program compile date = Oct 30 2013

thanks, Justin
Subject Author Posted

3dQwarp -allineate error

discoraj November 22, 2013 11:55AM

Re: 3dQwarp -allineate error

discoraj December 17, 2013 03:28PM

Re: 3dQwarp -allineate error

Peter Molfese December 17, 2013 04:08PM

Re: 3dQwarp -allineate error

discoraj December 17, 2013 05:02PM

Re: 3dQwarp -allineate error

Daniel Glen December 17, 2013 05:04PM

Re: 3dQwarp -allineate error

discoraj December 23, 2013 11:25AM

Re: 3dQwarp -allineate error

discoraj February 07, 2014 12:44PM

Re: 3dQwarp -allineate error

Emperor Zhark February 07, 2014 02:04PM

Re: 3dQwarp -allineate error

discoraj February 07, 2014 02:17PM

Re: 3dQwarp -allineate error

Emperor Zhark February 07, 2014 02:23PM

Re: 3dQwarp -allineate error

Emperor Zhark February 07, 2014 02:42PM

Re: 3dQwarp -allineate error

discoraj February 07, 2014 02:46PM