AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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Emily
December 09, 2013 08:27PM
Hi Afni Experts,

I had a quick question. I processed all of my resting data using afni proc py. number 9

When I create a correlation using 3dfim, should I remove the polort since this has already been done. The reason I am using this older program instead of InstaCorr is because I am using a seed ROI.

I am using the following example from Sim Corr Ana:

3dfim+ -input EPI_subj01+tlrc \
-polort 2 \ # Quadratic fitting of the baseline + drifting
-ort_file covariates.1D \ # optional, e.g., physiological regressors
-ideal_file Seed_subj01.1D \ # Seed
-out Correlation \
-bucket Corr_subj01

Thanks,

Emily
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Subject Author Posted

SimCorrAna

Emily December 09, 2013 08:27PM

Re: SimCorrAna

rick reynolds December 12, 2013 03:35PM

Re: SimCorrAna

Emily December 12, 2013 03:54PM

Re: SimCorrAna

rick reynolds December 13, 2013 08:28AM