AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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January 02, 2014 11:36PM
Hi. I am attempting to use 3dSkullStrip with an mp2rage image. While 3dSkullStrip is running, I receive several warnings about self-intersecting surfaces. The resulting output consists of only the midbrain and white matter surrounding the midbrain. The non-stripped image does not appear to have shading. I have tried adjusting the options in 3dSkullStrip, but I have not been able to improve the output. Is there a particular combination of options in 3dSkullStrip that may be appropriate to fix this issue?

Thanks!
Subject Author Posted

Skull Stripping MP2RAGE Image

asali January 02, 2014 11:36PM

Re: Skull Stripping MP2RAGE Image

ziad January 03, 2014 12:08PM

Re: Skull Stripping MP2RAGE Image

asali January 03, 2014 04:05PM

Re: Skull Stripping MP2RAGE Image

ziad January 03, 2014 07:57PM

Re: Skull Stripping MP2RAGE Image

ziad January 06, 2014 09:55AM