AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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January 21, 2014 12:30PM
Hi Jennifer,

What is the exact pair of SUMA and AFNI commands you ran that led to the bad alignment?
If you used for -sv the volume that you passed to FreeSurfer, rather than the one created in the SUMA/ directory by @SUMA_Make_Spec_FS then you may very well get a bad alignment.

Also, assuming you are using a recent version of AFNI/SUMA, I recommend you start using @SUMA_Make_Spec_FS with the option -GIFTI.

Let me know which volume you used for the -sv option and we'll take it from there.


cheers,
Ziad
Subject Author Posted

Registration issues using @SUMA_Make_Spec_FS

jbarredo January 16, 2014 12:35PM

Re: Registration issues using @SUMA_Make_Spec_FS

jbarredo January 21, 2014 10:27AM

Re: Registration issues using @SUMA_Make_Spec_FS

ziad January 21, 2014 12:30PM

Re: Registration issues using @SUMA_Make_Spec_FS

jbarredo January 21, 2014 04:03PM

Re: Registration issues using @SUMA_Make_Spec_FS

ziad January 21, 2014 09:20PM

Re: Registration issues using @SUMA_Make_Spec_FS

jbarredo January 23, 2014 09:06AM

Re: Registration issues using @SUMA_Make_Spec_FS

jbarredo January 27, 2014 03:26PM