AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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Peter Molfese
February 19, 2014 11:12AM
I've had success using the -affter flag to concatenate the affine transform to 3dQwarp's nonlinear warp. 

auto_warp.py -base TT_N27+tlrc -input anat+orig -skull_strip_input yes

3dNwarpApply -master ../TT_N27+tlrc \
-source MyROI.nii \
-nwarp '../awpy/anat.un.aff.qw_WARP.nii' \
-affter ../awpy/anat.un.aff.Xat.1D \
-prefix ROI_tt



Edited 1 time(s). Last edit at 02/19/2014 11:13AM by Peter Molfese.
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Subject Author Posted

applying auto_warp.py mapping to other datasets

ptaylor February 19, 2014 10:36AM

Re: applying auto_warp.py mapping to other datasets

Peter Molfese February 19, 2014 11:12AM

Re: applying auto_warp.py mapping to other datasets

ptaylor February 19, 2014 11:48AM

Re: applying auto_warp.py mapping to other datasets

rick reynolds February 19, 2014 11:22AM

Re: applying auto_warp.py mapping to other datasets

ptaylor February 19, 2014 11:50AM

Re: applying auto_warp.py mapping to other datasets

Daniel Glen February 19, 2014 01:32PM