AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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Matthew Hoptman
February 20, 2014 07:10AM
Hi Daniel,
This is very helpful! However, to be clear, do I not need to do any obliquity steps prior to running uber_subject.py? I should note that when I ran 3dWarp -deoblique on the MPRAGEs and EPIs, I got very nice registrations.

On another note, I noted that for one subject, I ran 3dWarp -deoblique on my input EPIs (2 runs) and got different output dimensions for them. I assume it is ok to just 3dresample the second scan to the dimensions of the first (no rotations or anything)?

Best,
Matt
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Subject Author Posted

To deoblique or not to deoblique?

Matthew Hoptman February 19, 2014 04:26PM

Re: To deoblique or not to deoblique?

Daniel Glen February 19, 2014 05:03PM

Re: To deoblique or not to deoblique?

Matthew Hoptman February 20, 2014 07:10AM

Re: To deoblique or not to deoblique?

Daniel Glen February 20, 2014 10:32AM