AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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Emily
February 24, 2014 01:43PM
Hi Rick,

Below is my script. The output file that I asked to print to a text file gives me the x, y and z for every time point not the average. It does look like the average is on the terminal window though. Is there any way I can have the average written to a text file? I attached a sample file. I will definitely look into the proc example.

cd /home/AD/ebelleau/Desktop/nas/MRI/IRC_PTSD/Resting/Masks

foreach subject (sub16 sub58 sub80 sub116 sub269 sub275 sub305 sub463 sub534 sub553 sub586 sub594 sub609 sub974 sub1052 sub1120 sub1133 sub1266 sub1530 sub1847 sub2023 sub2325 sub2625 sub3011)

3dFWHMx -dset errts.${subject}+tlrc \
-mask Bilateral_Amygdala+tlrc \
-detrend \
-out ${subject}.Amygdala_fwhm

end
Thanks!

Emily
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Subject Author Posted

3dFWHMx

Emily February 24, 2014 12:45PM

Re: 3dFWHMx

rick reynolds February 24, 2014 01:14PM

Re: 3dFWHMx

Emily February 24, 2014 01:43PM

Re: 3dFWHMx

rick reynolds February 24, 2014 01:51PM

Re: 3dFWHMx

Emily February 24, 2014 04:51PM

Re: 3dFWHMx

rick reynolds February 24, 2014 09:57PM