AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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February 28, 2014 02:42PM
Hi guys,

I have a quick question about fdrval:

I generated a brik dataset using 3dANOVA2 and trying to compute a t-value given a q-value using fdrval:

fdrval -qinput results_anova+tlrc 1 0.01

The sub-brik for the t-stat is 1 and the input for the q-value is 0.01. fdrval returns 5.144 and this value does not change even if the q-value is set to 0.001.

Looking at the AFNI GUI, there are no voxels that pass the q=0.01 threshold and it looks like that 5.144 is the t-value for the voxel with the smallest p-value. The q-value does not change passed 0.0353.

I'm using this in a script that creates "maps' for different q-values and this behavior causes my script to report significant regions at q=0.01 even though they do not pass this threshold, because the t-value reported by fdrval is used for thresholding.

So here is my question, finally:
Would it be possible to calculate the t-value for a given q-value, even though there is no voxel in the dataset that passes this threshold and return that value instead? Or would it be possible to return a t-value that is very high instead?

Thanks!
Jonathan
Subject Author Posted

fdrval: ceiling effect for given q-value

jlisinski February 28, 2014 02:42PM

Re: fdrval: ceiling effect for given q-value

gang March 04, 2014 11:02AM

Re: fdrval: ceiling effect for given q-value

jlisinski March 12, 2014 05:35PM

Re: fdrval: ceiling effect for given q-value

Emperor Zhark March 13, 2014 09:33AM

Re: fdrval: ceiling effect for given q-value

Emperor Zhark March 14, 2014 09:11AM

Re: fdrval: ceiling effect for given q-value

jlisinski March 17, 2014 01:06PM