AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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Mahshid
March 07, 2014 11:01AM
Thank you, 3dcopy worked for the volumetric data but not for the grayordinate timeseries.

It gives following errors:

3dcopy rfMRI_REST2_RL_Atlas_hp2000_clean.dtseries.nii test1
++ 3dcopy: AFNI version=AFNI_2011_12_21_1014 (Jan 8 2014) [64-bit]
*+ WARNING: missing view dataset: rfMRI_REST2_RL_Atlas_hp2000_clean.dtseries.nii+orig - SKIPPING
*+ WARNING: missing view dataset: rfMRI_REST2_RL_Atlas_hp2000_clean.dtseries.nii+acpc - SKIPPING
*+ WARNING: missing view dataset: rfMRI_REST2_RL_Atlas_hp2000_clean.dtseries.nii+tlrc - SKIPPING
** FATAL ERROR: no datasets found!
** Program compile date = Jan 8 2014


nifti_tool -disp_hdr rfMRI_REST1_LR_Atlas_hp2000_clean.dtseries.nii
** unknown option: 'rfMRI_REST1_LR_Atlas_hp2000_clean.dtseries.nii'

(I run again in the same directory as the data, and tried on different subjects.)
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Subject Author Posted

Problem with using AFNI for Human Connectome data

Mahshid March 07, 2014 10:09AM

Re: Problem with using AFNI for Human Connectome data

Daniel Glen March 07, 2014 10:20AM

Re: Problem with using AFNI for Human Connectome data

Mahshid March 07, 2014 11:01AM

Re: Problem with using AFNI for Human Connectome data

rick reynolds March 07, 2014 01:16PM

Re: Problem with using AFNI for Human Connectome data

Mahshid March 07, 2014 01:39PM

Re: Problem with using AFNI for Human Connectome data

rick reynolds March 07, 2014 02:48PM

Re: Problem with using AFNI for Human Connectome data

Mahshid March 10, 2014 08:29AM

Re: Problem with using AFNI for Human Connectome data

Emperor Zhark March 07, 2014 04:41PM