AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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March 09, 2014 02:48PM
Hello AFNI crew,

I am running PPI analysis via Gang's Context-Dependent Correlation Analysis instructions. I've used this pipeline before and haven't run into issues; however, this time around 1dUpsample outputs
"** FATAL ERROR: 1dUpsample can't read file '1797555712' " after running these commands:

3dmaskave -quiet -mask $roi/${seed}.nii B_baseline_DETREND+tlrc > ${seed}_AVE.1D
1dUpsample ${xx} ${seed}_AVE.1D\' > ${seed}_TRANS.1D

I assumed this was a transposition issue, so I added 1dtranspose:

3dmaskave -quiet -mask $roi/${seed}.nii B_baseline_DETREND+tlrc > ${seed}_AVE.1D
1dtranspose ${seed}_AVE.1D ${seed}_UPSAMPLE.1D
1dUpsample ${xx} ${seed}_UPSAMPLE.1D > ${seed}_TRANS.1D

...but these commands produced "** FATAL ERROR: 1dUpsample doesn't like file '-108684202'"

The input to 1dUpsample is a 1D text file with a single column of values that does exist within the working directory. Any help with this snag is much appreciated!

Thanks!
Subject Author Posted

1dUpsample error in PPI pipeline

tjkeding March 09, 2014 02:48PM

Re: 1dUpsample error in PPI pipeline

gang March 10, 2014 01:43PM

Re: 1dUpsample error in PPI pipeline

tjkeding March 19, 2014 03:15PM

Re: 1dUpsample error in PPI pipeline

rick reynolds March 20, 2014 08:24AM

Re: 1dUpsample error in PPI pipeline

gang March 19, 2014 04:29PM

Re: 1dUpsample error in PPI pipeline

tjkeding March 20, 2014 11:29AM

Re: 1dUpsample error in PPI pipeline

rick reynolds March 20, 2014 12:41PM