AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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Daniel Glen
April 02, 2014 03:32PM
If the additional interpolation isn't a concern, then you can do the 3drotate command. Slice timing correction (3dTshift) would have to be avoided if you do a 3drotate first. Alternatively, you could align to a template that is AC-PC aligned or separately rotate an anatomical dataset (which could be your FLASH dataset) and align the EPI dataset to that. If you're doing motion correction anyway, you might want to combine the transformations as done in our standard scripts, afni_proc.py and align_epi_anat.py.
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3drotate

bogadhiar April 01, 2014 02:49PM

Re: 3drotate

Daniel Glen April 02, 2014 03:32PM