Hi again,
I have been trying some things. I copied the .afnirc example off the internet and have been trying to add the variable : AFNI_ANALYZE_VIEW = tlrc but whenever I try to transform my +tlrc dataset to analyze format it still gives me one in +orig space. I also tried to convert the analyze format back to AFNI using 3dcopy but it gives me an error that it doesn't have any input file in any space although I put the .hdr after the input. I feel this is an issue because the analyze files need to be converted from +tlrc to analyze and back to tlrc space and I need to work on the analyze data in Analyze software. I believe all the data should be in +tlrc space. Can you please help me understand what is happening here better. I am very appreciative of any help you give me.
thanks,
-Linda
