AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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Peter Molfese
June 04, 2014 11:36AM
If you are not looking for session to session changes in cortical measures, then Freesurfer is pretty good at aligning multiple anatomical images and can use the two (or more) to do a type of anatomical motion correction. In the end you'll end up with only one SUMA directory for use in the surface-based analysis pipeline.

No need to align or skull-strip outside of Freesurfer - in fact doing so can cause you extra headache later on! 

recon-all -s subject1 -i anatomical1.nii -i anatomical2.nii -all

Using SUMA's @SUMA_AlignToExperiment should be able to take it from there.



Edited 1 time(s). Last edit at 06/04/2014 04:18PM by Peter Molfese.
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Preparing multi-session anatomicals for freesurfer?

shanusmagnus June 04, 2014 10:06AM

Re: Preparing multi-session anatomicals for freesurfer?

Peter Molfese June 04, 2014 11:36AM