AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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June 10, 2014 01:06PM
And fyi, here is the 3dVol2Surf command that was used to create the niml dset (which was then blurred using SurfSmooth):

# map volume data to the surface of each hemisphere
foreach hemi ( lh rh )
foreach run ( $runs )
3dVol2Surf -spec $surface_dir/PSK403_${hemi}.spec \
-sv ${subj}_SurfVol_Alnd_Exp+tlrc \
-surf_A smoothwm \
-surf_B pial \
-f_index nodes \
-f_steps 10 \
-map_func ave \
-oob_value 0 \
-grid_parent pb02.$subj.r$run.volreg+tlrc \
-out_niml pb03.$subj.$hemi.r$run.surf.niml.dset
end
end
Subject Author Posted

Surface Automask error in afni_proc.py

_durai_ June 10, 2014 01:04PM

Re: Surface Automask error in afni_proc.py

_durai_ June 10, 2014 01:06PM

Re: Surface Automask error in afni_proc.py

rick reynolds June 10, 2014 01:10PM

Re: Surface Automask error in afni_proc.py

_durai_ June 10, 2014 01:34PM

Re: Surface Automask error in afni_proc.py

rick reynolds June 10, 2014 01:49PM

Re: Surface Automask error in afni_proc.py

Peter Molfese June 10, 2014 02:08PM

Re: Surface Automask error in afni_proc.py

_durai_ June 10, 2014 02:13PM

Re: Surface Automask error in afni_proc.py

rick reynolds June 10, 2014 02:16PM