AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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Danny
July 02, 2014 11:09AM
I was able to run AFNI_proc.py with Qwarp where the skull was attached. However, again the registration wasn't the best but a little better than when skull-stripping is used.

It seems that the @toMNI_Qwarp did a better job with registration when I used that a while back. It seemed to omit the non-brain matter much better than Qwarp through AFNI_proc.py. Although there where other problems with @toMNI_Qwarp when I ran it (e.g., "droopiness"). I may try to run that again with the updated defaults and penality functinos.

Any ideas on why there would be a big difference between these two methods?

Thanks,

Danny
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Subject Author Posted

3dQwarp and skull-stripping issue

Danny June 30, 2014 02:48PM

Re: 3dQwarp and skull-stripping issue

Emperor Zhark July 01, 2014 09:07PM

Re: 3dQwarp and skull-stripping issue

Danny July 02, 2014 11:09AM

Re: 3dQwarp and skull-stripping issue

Daniel Glen July 02, 2014 04:36PM

Re: 3dQwarp and skull-stripping issue

Danny July 02, 2014 10:23PM

Re: 3dQwarp and skull-stripping issue

Daniel Glen July 03, 2014 11:07AM