AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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July 11, 2014 05:39PM
Thanks for the suggestions.

I was reading one of the example scripts ('@DDmb_analyze '), and it suggests '3dTcat' to concatenate all the runs and the concatenated output of '3dTcat' be used as input to 3dDeconvolve. The questions I have is, Should I detrend each run before I concatenate all the runs from different sessions and use the concatenated file as input to 3dDeconvolve?

The reason I am asking this is, the page for correlation analysis [afni.nimh.nih.gov]
says, i should detrend each run and concatenate across runs to construct the seed.1D.

But,the following lines from example script ('@DDmb_analyze') doesn't say if I should detrend before I concatenate runs across sessions and use the concatenated file as input to 3dDeconvolve?
3dTcat -prefix DDrall \
DDr1+orig'[2..109]' DDr2+orig'[2..109]' \
DDr3+orig'[2..109]' DDr4+orig'[2..109]'

Is it not a problem if I construct my interaction regressor by concatenating detrended data from runs across sessions(seed.1D) but not the input dataset (just concatenating runs across sessions with no detrending) to the 3dDeconvolve?

Thanks a lot for the help
Subject Author Posted

context dependent correlation analysis on selected blocks in a run

bogadhiar July 07, 2014 04:19PM

Re: context dependent correlation analysis on selected blocks in a run

gang July 07, 2014 05:41PM

Re: context dependent correlation analysis on selected blocks in a run

bogadhiar July 07, 2014 06:23PM

Re: context dependent correlation analysis on selected blocks in a run

gang July 09, 2014 09:56AM

Re: context dependent correlation analysis on selected blocks in a run

bogadhiar July 11, 2014 05:39PM

Re: context dependent correlation analysis on selected blocks in a run

rick reynolds July 11, 2014 08:54PM

Re: context dependent correlation analysis on selected blocks in a run

bogadhiar July 14, 2014 02:22PM

Re: context dependent correlation analysis on selected blocks in a run

rick reynolds July 14, 2014 03:32PM

Re: context dependent correlation analysis on selected blocks in a run

bogadhiar July 14, 2014 03:47PM

Re: context dependent correlation analysis on selected blocks in a run

bogadhiar July 18, 2014 01:23PM

Re: context dependent correlation analysis on selected blocks in a run

rick reynolds July 18, 2014 03:27PM