Once you have labels created in Freesurfer, you just need to convert them to GIFTI format (or NIFTI if it's a volume). So if I wanted to take BA45 from the fsaverage to an individual subject and convert it to GIFTI (.gii), I could do something like this:
mri_label2label --srcsubject fsaverage \
--srclabel fsaverage/label/lh.BA45.label \
--trgsubject Subject1 \
--trglabel Subject1/label/lh.BA45.label \
--hemi lh \
--regmethod surface
mris_convert --label Subject1/label/lh.BA45.label BA45 Subject1/surf/lh.white lh.BA45.label.gii
From this point, the main program you need is
@SUMA_Make_Spec_FS. I would suggest running it with the -GIFTI flag. You can then open the surfaces in SUMA and overlay the GIFTI ROI (formerly label):
suma -spec Subject1/SUMA/Subject1_both.spec -sv Subject1/SUMA/Subject1_SurfVol.nii
Then use Control-S to bring up surface controller, click Load Dset and select lh.BA45.label.gii.
Edited 1 time(s). Last edit at 10/28/2015 11:38AM by Peter Molfese.
