Hello,
I've run into an error running 3dMVM and would very much appreciate some tips on how to troubleshoot.
Here's my input:
3dMVM -prefix Test -jobs 1 \
-bsVars "group*sex+age" \
-wsVars "emotion" \
-qVars "age" \
-num_glt 3 \
-gltLabel 1 grp_sad_v_neu -gltCode 1 "group : 1*CTL -1*MDD emotion : 1*sad -1*neutral" \
-gltLabel 2 grp_sad_v_fear -gltCode 2 "group : 1*CTL -1*MDD emotion : 1*fear -1*neutral" \
-gltLabel 3 grp_neg_v_neu -gltCode 3 "group : 1*CTL -1*MDD emotion : 1*sad +1*fear -2*neutral" \
-dataTable table.txt
All of the image files I'm loading are in the cwd, and the table.txt file is as follows:
Subj group sex age emotion InputFile \
00075-GNG CTL F 12.75 neutral 00075-GNG_fear.nii.gz \
00075-GNG CTL F 12.75 fear 00075-GNG_neutral.nii.gz \
00075-GNG CTL F 12.75 sad 00075-GNG_sad.nii.gz \
00077-GNG MDD F 15.75 neutral 00077-GNG_fear.nii.gz \
00077-GNG MDD F 15.75 fear 00077-GNG_neutral.nii.gz \
00077-GNG MDD F 15.75 sad 00077-GNG_sad.nii.gz \
00078-GNG CTL F 16.66 neutral 00078-GNG_fear.nii.gz \
00078-GNG CTL F 16.66 fear 00078-GNG_neutral.nii.gz \
00078-GNG CTL F 16.66 sad 00078-GNG_sad.nii.gz \
00080-GNG MDD F 15.43 neutral 00080-GNG_fear.nii.gz \
00080-GNG MDD F 15.43 fear 00080-GNG_neutral.nii.gz \
00080-GNG MDD F 15.43 sad 00080-GNG_sad.nii.gz \
00081-GNG CTL F 14.33 neutral 00081-GNG_fear.nii.gz \
00081-GNG CTL F 14.33 fear 00081-GNG_neutral.nii.gz \
00081-GNG CTL F 14.33 sad 00081-GNG_sad.nii.gz \
00082-GNG CTL M 12.81 neutral 00082-GNG_fear.nii.gz \
00082-GNG CTL M 12.81 fear 00082-GNG_neutral.nii.gz \
00082-GNG CTL M 12.81 sad 00082-GNG_sad.nii.gz \
00083-GNG MDD M 15.82 neutral 00083-GNG_fear.nii.gz \
00083-GNG MDD M 15.82 fear 00083-GNG_neutral.nii.gz \
00083-GNG MDD M 15.82 sad 00083-GNG_sad.nii.gz \
00084-GNG MDD F 16.02 neutral 00084-GNG_fear.nii.gz \
00084-GNG MDD F 16.02 fear 00084-GNG_neutral.nii.gz \
00084-GNG MDD F 16.02 sad 00084-GNG_sad.nii.gz \
00086-GNG MDD F 16.18 neutral 00086-GNG_fear.nii.gz \
00086-GNG MDD F 16.18 fear 00086-GNG_neutral.nii.gz \
00086-GNG MDD F 16.18 sad 00086-GNG_sad.nii.gz \
00087-GNG MDD F 15.94 neutral 00087-GNG_fear.nii.gz \
00087-GNG MDD F 15.94 fear 00087-GNG_neutral.nii.gz \
00087-GNG MDD F 15.94 sad 00087-GNG_sad.nii.gz \
00089-GNG CTL F 16.30 neutral 00089-GNG_fear.nii.gz \
00089-GNG CTL F 16.30 fear 00089-GNG_neutral.nii.gz \
00089-GNG CTL F 16.30 sad 00089-GNG_sad.nii.gz \
00093-GNG CTL M 14.58 neutral 00093-GNG_fear.nii.gz \
00093-GNG CTL M 14.58 fear 00093-GNG_neutral.nii.gz \
00093-GNG CTL M 14.58 sad 00093-GNG_sad.nii.gz \
00096-GNG MDD F 14.50 neutral 00096-GNG_fear.nii.gz \
00096-GNG MDD F 14.50 fear 00096-GNG_neutral.nii.gz \
00096-GNG MDD F 14.50 sad 00096-GNG_sad.nii.gz \
00097-GNG CTL M 13.68 neutral 00097-GNG_fear.nii.gz \
00097-GNG CTL M 13.68 fear 00097-GNG_neutral.nii.gz \
00097-GNG CTL M 13.68 sad 00097-GNG_sad.nii.gz \
00099-GNG MDD F 17.24 neutral 00099-GNG_fear.nii.gz \
00099-GNG MDD F 17.24 fear 00099-GNG_neutral.nii.gz \
00099-GNG MDD F 17.24 sad 00099-GNG_sad.nii.gz \
00101-GNG MDD F 14.55 neutral 00101-GNG_fear.nii.gz \
00101-GNG MDD F 14.55 fear 00101-GNG_neutral.nii.gz \
00101-GNG MDD F 14.55 sad 00101-GNG_sad.nii.gz \
00104-GNG CTL F 16.95 neutral 00104-GNG_fear.nii.gz \
00104-GNG CTL F 16.95 fear 00104-GNG_neutral.nii.gz \
00104-GNG CTL F 16.95 sad 00104-GNG_sad.nii.gz \
00105-GNG MDD F 16.35 neutral 00105-GNG_fear.nii.gz \
00105-GNG MDD F 16.35 fear 00105-GNG_neutral.nii.gz \
00105-GNG MDD F 16.35 sad 00105-GNG_sad.nii.gz \
00106-GNG CTL F 15.91 neutral 00106-GNG_fear.nii.gz \
00106-GNG CTL F 15.91 fear 00106-GNG_neutral.nii.gz \
00106-GNG CTL F 15.91 sad 00106-GNG_sad.nii.gz \
00107-GNG CTL F 17.92 neutral 00107-GNG_fear.nii.gz \
00107-GNG CTL F 17.92 fear 00107-GNG_neutral.nii.gz \
00107-GNG CTL F 17.92 sad 00107-GNG_sad.nii.gz \
00108-GNG MDD F 14.02 neutral 00108-GNG_fear.nii.gz \
00108-GNG MDD F 14.02 fear 00108-GNG_neutral.nii.gz \
00108-GNG MDD F 14.02 sad 00108-GNG_sad.nii.gz \
00109-GNG MDD F 17.08 neutral 00109-GNG_fear.nii.gz \
00109-GNG MDD F 17.08 fear 00109-GNG_neutral.nii.gz \
00109-GNG MDD F 17.08 sad 00109-GNG_sad.nii.gz \
00110-GNG MDD F 12.53 neutral 00110-GNG_fear.nii.gz \
00110-GNG MDD F 12.53 fear 00110-GNG_neutral.nii.gz \
00110-GNG MDD F 12.53 sad 00110-GNG_sad.nii.gz \
00111-GNG CTL F 16.82 neutral 00111-GNG_fear.nii.gz \
00111-GNG CTL F 16.82 fear 00111-GNG_neutral.nii.gz \
00111-GNG CTL F 16.82 sad 00111-GNG_sad.nii.gz \
00112-GNG CTL F 16.89 neutral 00112-GNG_fear.nii.gz \
00112-GNG CTL F 16.89 fear 00112-GNG_neutral.nii.gz \
00112-GNG CTL F 16.89 sad 00112-GNG_sad.nii.gz \
00113-GNG CTL F 15.41 neutral 00113-GNG_fear.nii.gz \
00113-GNG CTL F 15.41 fear 00113-GNG_neutral.nii.gz \
00113-GNG CTL F 15.41 sad 00113-GNG_sad.nii.gz \
00115-GNG MDD M 16.22 neutral 00115-GNG_fear.nii.gz \
00115-GNG MDD M 16.22 fear 00115-GNG_neutral.nii.gz \
00115-GNG MDD M 16.22 sad 00115-GNG_sad.nii.gz \
00116-GNG MDD F 17.60 neutral 00116-GNG_fear.nii.gz \
00116-GNG MDD F 17.60 fear 00116-GNG_neutral.nii.gz \
00116-GNG MDD F 17.60 sad 00116-GNG_sad.nii.gz \
00123-GNG MDD F 15.53 neutral 00123-GNG_fear.nii.gz \
00123-GNG MDD F 15.53 fear 00123-GNG_neutral.nii.gz \
00123-GNG MDD F 15.53 sad 00123-GNG_sad.nii.gz \
00124-GNG CTL F 15.76 neutral 00124-GNG_fear.nii.gz \
00124-GNG CTL F 15.76 fear 00124-GNG_neutral.nii.gz \
00124-GNG CTL F 15.76 sad 00124-GNG_sad.nii.gz \
00125-GNG CTL F 13.11 neutral 00125-GNG_fear.nii.gz \
00125-GNG CTL F 13.11 fear 00125-GNG_neutral.nii.gz \
00125-GNG CTL F 13.11 sad 00125-GNG_sad.nii.gz \
00126-GNG CTL F 14.04 neutral 00126-GNG_fear.nii.gz \
00126-GNG CTL F 14.04 fear 00126-GNG_neutral.nii.gz \
00126-GNG CTL F 14.04 sad 00126-GNG_sad.nii.gz \
00127-GNG CTL F 14.00 neutral 00127-GNG_fear.nii.gz \
00127-GNG CTL F 14.00 fear 00127-GNG_neutral.nii.gz \
00127-GNG CTL F 14.00 sad 00127-GNG_sad.nii.gz \
The error message I'm getting states:
Error in if (len%%wd != 0) errex.AFNI(paste("The content under -dataTable is not rectangular !", :
argument is of length zero
Calls: process.MVM.opts
Execution halted
Many thanks in advance,
Lara
