AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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TimMeeker
July 30, 2014 02:22PM
Hello All,
I am having an issue using SurfClust. I do not know what surface filename would put after -surf_A. I did an analysis on surface data and generated a .gii file from 3dANOVA2. I used the fsaverage to normalize the T1mprage files to, but now I'm not sure what input I should set for -surf_A.

SurfClust -spec fsaverage_lh.spec -surf_A -input ANOVALhemimencycthick.gii 1 -rmm 2 -thresh_col 1 -thresh 2.87 -amm2 98 -prefix LhemimencycthickPhasemainF05 -out_clusterdset

Thank you,
Tim
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Subject Author Posted

Surfclust issue

TimMeeker July 30, 2014 02:22PM

Re: Surfclust issue

ziad July 30, 2014 06:17PM

Re: Surfclust issue

TimMeeker July 31, 2014 04:14PM