AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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August 14, 2014 09:39AM
Thanks for your reply, Rick.
A couple of things not clear to me.

Regardless, the goal is to find a fit to the interaction
term, perhaps while ruling out a fit to just the seed.
Even if the seed happened to be a combination of task
regressors, we would not care (multicolliearity aside),
because those terms are all considered "noise" in the
model. Only the interaction result matters.

- when I did the CDCor analysis, and overlayed the betas for the ROI, the map looks weird in the sense that
some measurement noise contaminating voxels aroudn the ROI all along the brain in AP and DV but not in LR directions.
The interaction betas make sense. SHould the betas for ROI not reflect correlation of the ROI time course with all other voxels above and beyond the task regressors?


Along these lines, it is generally a nice idea to start
with the residual time series when extracting the seed
to begin with. There is no reason to leave the seed
contaminated with any signals that one might consider as
noise from the view of the new model.

So, As I understand First do the GLM with just the taks regressors and regressors of no interest.
get the ROI time series using the residual time series from ROI voxels from the above model.
Use the ROI residual time series to get interaction terms for task regressors.
Use the above ROI residual time series and the interaction terms as regressors to fit the residuals from the model with task regressors.
Is that a nice way to do it?

Amar
Subject Author Posted

context-dependent correlation analysis

bogadhiar August 08, 2014 06:44PM

Re: context-dependent correlation analysis

rick reynolds August 13, 2014 02:02PM

Re: context-dependent correlation analysis

bogadhiar August 14, 2014 09:39AM