afni.nimh.nih.gov

Hi,

Can you give us your entire afni_proc.py script? Is there anything unique about this one subject's anatomy or scan - such as partial coverage? Most other subjects look good after processing?

You can try using uber_align_test.py to try out different cost functions between the EPI and anatomical, once you've found one you can add options to the processing script with the flag -align_opts_aea

-PM